Hb_003302_010

Information

Type -
Description -
Location Contig3302: 8135-12657
Sequence    

Annotation

kegg
ID cic:CICLE_v10014579mg
description hypothetical protein
nr
ID XP_012082034.1
description PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
swissprot
ID Q9SGH6
description Alpha-dioxygenase 1 OS=Arabidopsis thaliana GN=DOX1 PE=1 SV=1
trembl
ID V4U1E4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014579mg PE=4 SV=1
Gene Ontology
ID GO:0004601
description alpha-dioxygenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34713: 8310-12302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003302_010 0.0 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
2 Hb_023738_010 0.1176608137 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
3 Hb_080033_020 0.1270390272 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
4 Hb_144045_010 0.1309178104 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
5 Hb_000512_050 0.1319150583 - - hypothetical protein VITISV_005640 [Vitis vinifera]
6 Hb_005092_090 0.1392096627 - - cold regulated protein [Manihot esculenta]
7 Hb_000060_130 0.1402839909 - - -
8 Hb_007543_020 0.1502036552 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
9 Hb_089568_010 0.1512274635 - - ferric reductase oxidase [Manihot esculenta]
10 Hb_005623_060 0.1534964409 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_004374_090 0.1546167501 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
12 Hb_001345_040 0.1546268083 - - hypothetical protein VITISV_015004 [Vitis vinifera]
13 Hb_006588_020 0.155370009 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_000441_080 0.1580307539 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_003299_060 0.1596804056 - - nitrate transporter, putative [Ricinus communis]
16 Hb_001587_050 0.1605167905 - - -
17 Hb_001355_050 0.1622259882 - - -
18 Hb_180214_010 0.1634289851 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
19 Hb_020831_070 0.164295509 - - hypothetical protein VITISV_027174 [Vitis vinifera]
20 Hb_001946_130 0.1663466017 - - -

Gene co-expression network

sample Hb_003302_010 Hb_003302_010 Hb_023738_010 Hb_023738_010 Hb_003302_010--Hb_023738_010 Hb_080033_020 Hb_080033_020 Hb_003302_010--Hb_080033_020 Hb_144045_010 Hb_144045_010 Hb_003302_010--Hb_144045_010 Hb_000512_050 Hb_000512_050 Hb_003302_010--Hb_000512_050 Hb_005092_090 Hb_005092_090 Hb_003302_010--Hb_005092_090 Hb_000060_130 Hb_000060_130 Hb_003302_010--Hb_000060_130 Hb_029510_060 Hb_029510_060 Hb_023738_010--Hb_029510_060 Hb_093388_010 Hb_093388_010 Hb_023738_010--Hb_093388_010 Hb_004374_090 Hb_004374_090 Hb_023738_010--Hb_004374_090 Hb_001250_030 Hb_001250_030 Hb_023738_010--Hb_001250_030 Hb_000441_080 Hb_000441_080 Hb_023738_010--Hb_000441_080 Hb_080033_020--Hb_000512_050 Hb_005623_060 Hb_005623_060 Hb_080033_020--Hb_005623_060 Hb_001587_050 Hb_001587_050 Hb_080033_020--Hb_001587_050 Hb_004407_030 Hb_004407_030 Hb_080033_020--Hb_004407_030 Hb_003169_040 Hb_003169_040 Hb_080033_020--Hb_003169_040 Hb_000042_310 Hb_000042_310 Hb_144045_010--Hb_000042_310 Hb_003299_060 Hb_003299_060 Hb_144045_010--Hb_003299_060 Hb_015824_010 Hb_015824_010 Hb_144045_010--Hb_015824_010 Hb_004374_100 Hb_004374_100 Hb_144045_010--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_144045_010--Hb_000280_030 Hb_001691_170 Hb_001691_170 Hb_144045_010--Hb_001691_170 Hb_000512_050--Hb_005623_060 Hb_000512_050--Hb_003169_040 Hb_180214_010 Hb_180214_010 Hb_000512_050--Hb_180214_010 Hb_150516_010 Hb_150516_010 Hb_000512_050--Hb_150516_010 Hb_006588_020 Hb_006588_020 Hb_005092_090--Hb_006588_020 Hb_000574_340 Hb_000574_340 Hb_005092_090--Hb_000574_340 Hb_001345_040 Hb_001345_040 Hb_005092_090--Hb_001345_040 Hb_116784_020 Hb_116784_020 Hb_005092_090--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_005092_090--Hb_001366_260 Hb_012796_030 Hb_012796_030 Hb_005092_090--Hb_012796_030 Hb_007543_020 Hb_007543_020 Hb_000060_130--Hb_007543_020 Hb_000060_130--Hb_005092_090 Hb_000060_130--Hb_116784_020 Hb_004899_210 Hb_004899_210 Hb_000060_130--Hb_004899_210 Hb_000060_130--Hb_001366_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.8869 9.07913 1.26245 0 0.00877543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0835536 0.032872 0 6.01201 44.8276

CAGE analysis