Hb_001587_050

Information

Type -
Description -
Location Contig1587: 40930-42584
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_050 0.0 - - -
2 Hb_089568_010 0.0552597851 - - ferric reductase oxidase [Manihot esculenta]
3 Hb_006356_010 0.0613182152 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
4 Hb_144045_010 0.131675642 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
5 Hb_080033_020 0.1341851675 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
6 Hb_000042_310 0.1491980718 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_090889_010 0.1514504797 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_003302_010 0.1605167905 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
9 Hb_004374_100 0.1632398425 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
10 Hb_000280_030 0.1670793622 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
11 Hb_000638_270 0.1712475701 - - -
12 Hb_000987_160 0.1809108323 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
13 Hb_003299_060 0.1906947537 - - nitrate transporter, putative [Ricinus communis]
14 Hb_000512_050 0.1909943495 - - hypothetical protein VITISV_005640 [Vitis vinifera]
15 Hb_015824_010 0.1937259819 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_000826_080 0.2004285754 - - -
17 Hb_001355_050 0.2013180614 - - -
18 Hb_100404_010 0.2022145897 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
19 Hb_004407_030 0.2061717405 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_000039_190 0.2092046075 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001587_050 Hb_001587_050 Hb_089568_010 Hb_089568_010 Hb_001587_050--Hb_089568_010 Hb_006356_010 Hb_006356_010 Hb_001587_050--Hb_006356_010 Hb_144045_010 Hb_144045_010 Hb_001587_050--Hb_144045_010 Hb_080033_020 Hb_080033_020 Hb_001587_050--Hb_080033_020 Hb_000042_310 Hb_000042_310 Hb_001587_050--Hb_000042_310 Hb_090889_010 Hb_090889_010 Hb_001587_050--Hb_090889_010 Hb_089568_010--Hb_006356_010 Hb_089568_010--Hb_090889_010 Hb_003302_010 Hb_003302_010 Hb_089568_010--Hb_003302_010 Hb_089568_010--Hb_080033_020 Hb_089568_010--Hb_144045_010 Hb_000987_160 Hb_000987_160 Hb_006356_010--Hb_000987_160 Hb_006356_010--Hb_090889_010 Hb_006356_010--Hb_000042_310 Hb_004374_100 Hb_004374_100 Hb_006356_010--Hb_004374_100 Hb_144045_010--Hb_000042_310 Hb_003299_060 Hb_003299_060 Hb_144045_010--Hb_003299_060 Hb_015824_010 Hb_015824_010 Hb_144045_010--Hb_015824_010 Hb_144045_010--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_144045_010--Hb_000280_030 Hb_001691_170 Hb_001691_170 Hb_144045_010--Hb_001691_170 Hb_000512_050 Hb_000512_050 Hb_080033_020--Hb_000512_050 Hb_005623_060 Hb_005623_060 Hb_080033_020--Hb_005623_060 Hb_080033_020--Hb_003302_010 Hb_004407_030 Hb_004407_030 Hb_080033_020--Hb_004407_030 Hb_003169_040 Hb_003169_040 Hb_080033_020--Hb_003169_040 Hb_000042_310--Hb_004374_100 Hb_000042_310--Hb_000280_030 Hb_000042_310--Hb_015824_010 Hb_000638_270 Hb_000638_270 Hb_000042_310--Hb_000638_270 Hb_000705_010 Hb_000705_010 Hb_000042_310--Hb_000705_010 Hb_003062_020 Hb_003062_020 Hb_090889_010--Hb_003062_020 Hb_012807_070 Hb_012807_070 Hb_090889_010--Hb_012807_070 Hb_000039_190 Hb_000039_190 Hb_090889_010--Hb_000039_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0667121 0.155182 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0484793 0.356114

CAGE analysis