Hb_003062_020

Information

Type -
Description -
Location Contig3062: 25378-25620
Sequence    

Annotation

kegg
ID bvg:104896168
description uncharacterized LOC104896168
nr
ID AAT40504.2
description Polyprotein, putative [Solanum demissum]
swissprot
ID -
description -
trembl
ID Q6L4B3
description Polyprotein, putative OS=Solanum demissum GN=SDM1_19t00015 PE=4 SV=2
Gene Ontology
ID GO:0016740
description rna-directed dna polymerase (reverse transcriptase)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003062_020 0.0 - - Polyprotein, putative [Solanum demissum]
2 Hb_017098_020 0.0737511986 - - Zinc finger protein GIS2 [Medicago truncatula]
3 Hb_012807_070 0.0742400955 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
4 Hb_009780_010 0.0781692968 - - conserved hypothetical protein [Ricinus communis]
5 Hb_090889_010 0.0965744765 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
6 Hb_011038_020 0.108214691 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000039_190 0.154017569 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_001631_110 0.1558397569 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
9 Hb_001040_090 0.1772689156 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
10 Hb_010614_010 0.1814008634 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
11 Hb_101034_020 0.1878871689 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
12 Hb_000732_160 0.1969680152 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_071130_020 0.1985334076 - - -
14 Hb_094439_010 0.2014493929 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
15 Hb_004880_120 0.2027313635 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
16 Hb_013786_010 0.2043825965 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_168509_020 0.2080657157 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
18 Hb_000417_250 0.2096593556 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
19 Hb_008341_010 0.2125055614 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
20 Hb_004176_090 0.2156748985 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]

Gene co-expression network

sample Hb_003062_020 Hb_003062_020 Hb_017098_020 Hb_017098_020 Hb_003062_020--Hb_017098_020 Hb_012807_070 Hb_012807_070 Hb_003062_020--Hb_012807_070 Hb_009780_010 Hb_009780_010 Hb_003062_020--Hb_009780_010 Hb_090889_010 Hb_090889_010 Hb_003062_020--Hb_090889_010 Hb_011038_020 Hb_011038_020 Hb_003062_020--Hb_011038_020 Hb_000039_190 Hb_000039_190 Hb_003062_020--Hb_000039_190 Hb_017098_020--Hb_012807_070 Hb_017098_020--Hb_009780_010 Hb_001631_110 Hb_001631_110 Hb_017098_020--Hb_001631_110 Hb_017098_020--Hb_011038_020 Hb_017098_020--Hb_090889_010 Hb_012807_070--Hb_009780_010 Hb_012807_070--Hb_090889_010 Hb_130579_050 Hb_130579_050 Hb_012807_070--Hb_130579_050 Hb_004880_120 Hb_004880_120 Hb_012807_070--Hb_004880_120 Hb_009780_010--Hb_011038_020 Hb_009780_010--Hb_090889_010 Hb_101034_020 Hb_101034_020 Hb_009780_010--Hb_101034_020 Hb_089568_010 Hb_089568_010 Hb_090889_010--Hb_089568_010 Hb_006356_010 Hb_006356_010 Hb_090889_010--Hb_006356_010 Hb_090889_010--Hb_000039_190 Hb_001587_050 Hb_001587_050 Hb_090889_010--Hb_001587_050 Hb_011038_020--Hb_101034_020 Hb_168509_020 Hb_168509_020 Hb_011038_020--Hb_168509_020 Hb_013786_010 Hb_013786_010 Hb_011038_020--Hb_013786_010 Hb_001040_090 Hb_001040_090 Hb_000039_190--Hb_001040_090 Hb_094439_010 Hb_094439_010 Hb_000039_190--Hb_094439_010 Hb_003050_010 Hb_003050_010 Hb_000039_190--Hb_003050_010 Hb_000987_160 Hb_000987_160 Hb_000039_190--Hb_000987_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.67592 2.43047 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.750632 2.90712

CAGE analysis