Hb_001631_110

Information

Type -
Description -
Location Contig1631: 113792-116456
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08450g
description POPTRDRAFT_760175; gamma-glutamyltranspeptidase family protein
nr
ID XP_011021908.1
description PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
swissprot
ID Q8VYW6
description Gamma-glutamyltranspeptidase 1 OS=Arabidopsis thaliana GN=GGT1 PE=2 SV=1
trembl
ID B9H594
description Gamma-glutamyltranspeptidase family protein OS=Populus trichocarpa GN=POPTR_0005s08450g PE=4 SV=1
Gene Ontology
ID GO:0003840
description gamma-glutamyltranspeptidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14857: 113849-116585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001631_110 0.0 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
2 Hb_008341_010 0.0747593282 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
3 Hb_004241_170 0.0895894869 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
4 Hb_000732_160 0.1030086872 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_010091_030 0.1180446079 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
6 Hb_004800_140 0.1272567255 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
7 Hb_017098_020 0.1348048921 - - Zinc finger protein GIS2 [Medicago truncatula]
8 Hb_010614_010 0.1356358433 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
9 Hb_010175_050 0.1513059979 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
10 Hb_003349_020 0.1525338621 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
11 Hb_001040_090 0.1546791715 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
12 Hb_003062_020 0.1558397569 - - Polyprotein, putative [Solanum demissum]
13 Hb_010904_010 0.1613743113 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
14 Hb_031685_010 0.1688502282 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_000340_380 0.1689429276 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
16 Hb_131719_010 0.1725031553 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
17 Hb_004880_120 0.172588905 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
18 Hb_094439_010 0.1730014814 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
19 Hb_012807_070 0.1731716507 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
20 Hb_009780_010 0.1750963108 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001631_110 Hb_001631_110 Hb_008341_010 Hb_008341_010 Hb_001631_110--Hb_008341_010 Hb_004241_170 Hb_004241_170 Hb_001631_110--Hb_004241_170 Hb_000732_160 Hb_000732_160 Hb_001631_110--Hb_000732_160 Hb_010091_030 Hb_010091_030 Hb_001631_110--Hb_010091_030 Hb_004800_140 Hb_004800_140 Hb_001631_110--Hb_004800_140 Hb_017098_020 Hb_017098_020 Hb_001631_110--Hb_017098_020 Hb_008341_010--Hb_004241_170 Hb_008341_010--Hb_010091_030 Hb_010175_050 Hb_010175_050 Hb_008341_010--Hb_010175_050 Hb_008341_010--Hb_004800_140 Hb_008341_010--Hb_000732_160 Hb_004241_170--Hb_010091_030 Hb_004241_170--Hb_004800_140 Hb_004241_170--Hb_000732_160 Hb_004241_170--Hb_010175_050 Hb_010614_010 Hb_010614_010 Hb_000732_160--Hb_010614_010 Hb_031685_010 Hb_031685_010 Hb_000732_160--Hb_031685_010 Hb_094439_010 Hb_094439_010 Hb_000732_160--Hb_094439_010 Hb_010904_010 Hb_010904_010 Hb_000732_160--Hb_010904_010 Hb_003811_030 Hb_003811_030 Hb_010091_030--Hb_003811_030 Hb_010091_030--Hb_010175_050 Hb_164146_020 Hb_164146_020 Hb_010091_030--Hb_164146_020 Hb_002999_130 Hb_002999_130 Hb_004800_140--Hb_002999_130 Hb_000340_380 Hb_000340_380 Hb_004800_140--Hb_000340_380 Hb_004800_140--Hb_000732_160 Hb_012807_070 Hb_012807_070 Hb_017098_020--Hb_012807_070 Hb_009780_010 Hb_009780_010 Hb_017098_020--Hb_009780_010 Hb_003062_020 Hb_003062_020 Hb_017098_020--Hb_003062_020 Hb_011038_020 Hb_011038_020 Hb_017098_020--Hb_011038_020 Hb_090889_010 Hb_090889_010 Hb_017098_020--Hb_090889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.010528 12.1932 11.9403 0.701955 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.018833 0 1.37186 8.78189

CAGE analysis