Hb_000340_380

Information

Type -
Description -
Location Contig340: 328213-330830
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13210g
description POPTRDRAFT_572780; hypothetical protein
nr
ID XP_012092323.1
description PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
swissprot
ID Q8RXC8
description Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1
trembl
ID B9I9Z5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13210g PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like cytosolic serine threonine-protein kinase rbk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35569: 327616-328536 , PASA_asmbl_35570: 327842-330899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_380 0.0 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
2 Hb_031685_010 0.1127069984 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_004109_270 0.1221433988 transcription factor TF Family: NAC transcription activator NAC1 family protein [Populus trichocarpa]
4 Hb_010904_010 0.1256819392 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
5 Hb_004800_140 0.127139587 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
6 Hb_008202_010 0.129104722 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_000732_160 0.1296934776 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_000110_040 0.1314346063 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
9 Hb_002596_090 0.1338678247 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
10 Hb_003337_020 0.1388087812 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
11 Hb_003970_010 0.139872403 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
12 Hb_005888_050 0.1401027572 - - ATP binding protein, putative [Ricinus communis]
13 Hb_135714_010 0.1443515692 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
14 Hb_002999_130 0.1451421282 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
15 Hb_029095_010 0.1471432786 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
16 Hb_094439_010 0.1497673104 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
17 Hb_001898_100 0.1510264869 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
18 Hb_005486_020 0.1524653544 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
19 Hb_002030_090 0.1536626393 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_005999_020 0.1536840032 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000340_380 Hb_000340_380 Hb_031685_010 Hb_031685_010 Hb_000340_380--Hb_031685_010 Hb_004109_270 Hb_004109_270 Hb_000340_380--Hb_004109_270 Hb_010904_010 Hb_010904_010 Hb_000340_380--Hb_010904_010 Hb_004800_140 Hb_004800_140 Hb_000340_380--Hb_004800_140 Hb_008202_010 Hb_008202_010 Hb_000340_380--Hb_008202_010 Hb_000732_160 Hb_000732_160 Hb_000340_380--Hb_000732_160 Hb_006789_030 Hb_006789_030 Hb_031685_010--Hb_006789_030 Hb_029095_010 Hb_029095_010 Hb_031685_010--Hb_029095_010 Hb_031685_010--Hb_000732_160 Hb_005888_050 Hb_005888_050 Hb_031685_010--Hb_005888_050 Hb_003337_020 Hb_003337_020 Hb_031685_010--Hb_003337_020 Hb_094439_010 Hb_094439_010 Hb_031685_010--Hb_094439_010 Hb_001172_150 Hb_001172_150 Hb_004109_270--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_004109_270--Hb_061126_010 Hb_000697_020 Hb_000697_020 Hb_004109_270--Hb_000697_020 Hb_001953_110 Hb_001953_110 Hb_004109_270--Hb_001953_110 Hb_008878_020 Hb_008878_020 Hb_004109_270--Hb_008878_020 Hb_003970_010 Hb_003970_010 Hb_010904_010--Hb_003970_010 Hb_002211_020 Hb_002211_020 Hb_010904_010--Hb_002211_020 Hb_010904_010--Hb_000732_160 Hb_171168_010 Hb_171168_010 Hb_010904_010--Hb_171168_010 Hb_010904_010--Hb_008202_010 Hb_000110_040 Hb_000110_040 Hb_010904_010--Hb_000110_040 Hb_004241_170 Hb_004241_170 Hb_004800_140--Hb_004241_170 Hb_002999_130 Hb_002999_130 Hb_004800_140--Hb_002999_130 Hb_008341_010 Hb_008341_010 Hb_004800_140--Hb_008341_010 Hb_001631_110 Hb_001631_110 Hb_004800_140--Hb_001631_110 Hb_004800_140--Hb_000732_160 Hb_029584_110 Hb_029584_110 Hb_008202_010--Hb_029584_110 Hb_135714_010 Hb_135714_010 Hb_008202_010--Hb_135714_010 Hb_008202_010--Hb_005888_050 Hb_008202_010--Hb_003970_010 Hb_002596_090 Hb_002596_090 Hb_008202_010--Hb_002596_090 Hb_111997_010 Hb_111997_010 Hb_008202_010--Hb_111997_010 Hb_010614_010 Hb_010614_010 Hb_000732_160--Hb_010614_010 Hb_000732_160--Hb_094439_010 Hb_000732_160--Hb_001631_110 Hb_000732_160--Hb_004241_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0367438 6.43287 10.937 1.87671 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0257864 0.162308 0.345066 1.25264 7.85963

CAGE analysis