Hb_004109_270

Information

Type transcription factor
Description TF Family: NAC
Location Contig4109: 261956-265707
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08420g
description POPTRDRAFT_819928; transcription activator NAC1 family protein
nr
ID XP_002310688.1
description transcription activator NAC1 family protein [Populus trichocarpa]
swissprot
ID Q84TE6
description NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2
trembl
ID B9HH13
description Transcription activator NAC1 family protein OS=Populus trichocarpa GN=POPTR_0007s08420g PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 21 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40667: 261891-265770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_270 0.0 transcription factor TF Family: NAC transcription activator NAC1 family protein [Populus trichocarpa]
2 Hb_000340_380 0.1221433988 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
3 Hb_001172_150 0.1233818735 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
4 Hb_061126_010 0.124466324 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_000697_020 0.1325917269 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
6 Hb_001953_110 0.1334415765 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
7 Hb_008878_020 0.137930017 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
8 Hb_046739_010 0.1389080411 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
9 Hb_002010_030 0.141391002 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_000120_490 0.1428195617 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
11 Hb_000212_270 0.1435313671 - - calreticulin, putative [Ricinus communis]
12 Hb_003970_010 0.1458228723 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
13 Hb_001040_090 0.1468768192 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
14 Hb_010904_010 0.1468985064 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
15 Hb_002818_160 0.1472023264 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
16 Hb_000705_010 0.1475351556 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
17 Hb_000031_320 0.1477818367 - - unnamed protein product [Vitis vinifera]
18 Hb_002030_090 0.1478751588 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
19 Hb_003337_020 0.1495053901 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
20 Hb_006478_050 0.1509946768 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_270 Hb_004109_270 Hb_000340_380 Hb_000340_380 Hb_004109_270--Hb_000340_380 Hb_001172_150 Hb_001172_150 Hb_004109_270--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_004109_270--Hb_061126_010 Hb_000697_020 Hb_000697_020 Hb_004109_270--Hb_000697_020 Hb_001953_110 Hb_001953_110 Hb_004109_270--Hb_001953_110 Hb_008878_020 Hb_008878_020 Hb_004109_270--Hb_008878_020 Hb_031685_010 Hb_031685_010 Hb_000340_380--Hb_031685_010 Hb_010904_010 Hb_010904_010 Hb_000340_380--Hb_010904_010 Hb_004800_140 Hb_004800_140 Hb_000340_380--Hb_004800_140 Hb_008202_010 Hb_008202_010 Hb_000340_380--Hb_008202_010 Hb_000732_160 Hb_000732_160 Hb_000340_380--Hb_000732_160 Hb_001172_150--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_001172_150--Hb_003119_130 Hb_001172_150--Hb_008878_020 Hb_000212_270 Hb_000212_270 Hb_001172_150--Hb_000212_270 Hb_001172_150--Hb_061126_010 Hb_000705_010 Hb_000705_010 Hb_001172_150--Hb_000705_010 Hb_061126_010--Hb_000697_020 Hb_000120_490 Hb_000120_490 Hb_061126_010--Hb_000120_490 Hb_061126_010--Hb_000705_010 Hb_063405_010 Hb_063405_010 Hb_061126_010--Hb_063405_010 Hb_002010_030 Hb_002010_030 Hb_061126_010--Hb_002010_030 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_000697_020--Hb_000212_270 Hb_000697_020--Hb_063405_010 Hb_000697_020--Hb_000705_010 Hb_023904_010 Hb_023904_010 Hb_001953_110--Hb_023904_010 Hb_001040_090 Hb_001040_090 Hb_001953_110--Hb_001040_090 Hb_005227_030 Hb_005227_030 Hb_001953_110--Hb_005227_030 Hb_001953_110--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_001953_110--Hb_004109_140 Hb_002818_160 Hb_002818_160 Hb_001953_110--Hb_002818_160 Hb_008878_020--Hb_000212_270 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_008878_020--Hb_000697_020 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.33564 4.66831 0.957845 0.0226032 0.0545955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0552898 0.0434822 0.159303 0.508001 5.30938

CAGE analysis