Hb_009780_010

Information

Type -
Description -
Location Contig9780: 5040-9889
Sequence    

Annotation

kegg
ID rcu:RCOM_0307650
description hypothetical protein
nr
ID XP_002534031.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T712
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0307650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009780_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_017098_020 0.0712867629 - - Zinc finger protein GIS2 [Medicago truncatula]
3 Hb_003062_020 0.0781692968 - - Polyprotein, putative [Solanum demissum]
4 Hb_012807_070 0.0861060039 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
5 Hb_011038_020 0.1019067308 - - conserved hypothetical protein [Ricinus communis]
6 Hb_090889_010 0.1623504903 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_101034_020 0.1637254183 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
8 Hb_013786_010 0.1650054054 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001631_110 0.1750963108 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
10 Hb_010614_010 0.188531558 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
11 Hb_002025_240 0.1903843429 - - -
12 Hb_168509_020 0.1912135538 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
13 Hb_071130_020 0.1912974104 - - -
14 Hb_000417_250 0.1936926513 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
15 Hb_130579_050 0.1973323406 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
16 Hb_003442_120 0.1976525818 - - hypothetical protein VITISV_019818 [Vitis vinifera]
17 Hb_118046_010 0.2002186526 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
18 Hb_000028_270 0.202660056 - - -
19 Hb_000039_190 0.2105468992 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
20 Hb_000732_160 0.2122781515 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_009780_010 Hb_009780_010 Hb_017098_020 Hb_017098_020 Hb_009780_010--Hb_017098_020 Hb_003062_020 Hb_003062_020 Hb_009780_010--Hb_003062_020 Hb_012807_070 Hb_012807_070 Hb_009780_010--Hb_012807_070 Hb_011038_020 Hb_011038_020 Hb_009780_010--Hb_011038_020 Hb_090889_010 Hb_090889_010 Hb_009780_010--Hb_090889_010 Hb_101034_020 Hb_101034_020 Hb_009780_010--Hb_101034_020 Hb_017098_020--Hb_012807_070 Hb_017098_020--Hb_003062_020 Hb_001631_110 Hb_001631_110 Hb_017098_020--Hb_001631_110 Hb_017098_020--Hb_011038_020 Hb_017098_020--Hb_090889_010 Hb_003062_020--Hb_012807_070 Hb_003062_020--Hb_090889_010 Hb_003062_020--Hb_011038_020 Hb_000039_190 Hb_000039_190 Hb_003062_020--Hb_000039_190 Hb_012807_070--Hb_090889_010 Hb_130579_050 Hb_130579_050 Hb_012807_070--Hb_130579_050 Hb_004880_120 Hb_004880_120 Hb_012807_070--Hb_004880_120 Hb_011038_020--Hb_101034_020 Hb_168509_020 Hb_168509_020 Hb_011038_020--Hb_168509_020 Hb_013786_010 Hb_013786_010 Hb_011038_020--Hb_013786_010 Hb_089568_010 Hb_089568_010 Hb_090889_010--Hb_089568_010 Hb_006356_010 Hb_006356_010 Hb_090889_010--Hb_006356_010 Hb_090889_010--Hb_000039_190 Hb_001587_050 Hb_001587_050 Hb_090889_010--Hb_001587_050 Hb_101034_020--Hb_168509_020 Hb_001427_220 Hb_001427_220 Hb_101034_020--Hb_001427_220 Hb_002279_020 Hb_002279_020 Hb_101034_020--Hb_002279_020 Hb_092458_010 Hb_092458_010 Hb_101034_020--Hb_092458_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.122575 0.0790549 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0367146 0.092369

CAGE analysis