Hb_004445_030

Information

Type -
Description -
Location Contig4445: 29943-33150
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42775: 17226-34870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004445_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_054127_020 0.1054571523 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
3 Hb_047923_030 0.1087595016 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
4 Hb_002576_010 0.1105353468 - - -
5 Hb_004052_130 0.1106241156 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
6 Hb_009355_010 0.1384367952 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]
7 Hb_144838_010 0.1408317298 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
8 Hb_008680_010 0.1418480461 - - -
9 Hb_002598_030 0.1459947381 - - -
10 Hb_152483_010 0.1477537755 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
11 Hb_041711_040 0.1477934575 - - hypothetical protein, partial [Pseudomonas fluorescens]
12 Hb_039164_010 0.1478038709 - - -
13 Hb_000629_090 0.1478156578 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
14 Hb_004683_030 0.1478867596 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
15 Hb_003625_030 0.14792446 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
16 Hb_099878_040 0.1488363066 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
17 Hb_000710_100 0.1489665008 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
18 Hb_010623_010 0.1491252968 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
19 Hb_000311_130 0.1496752639 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
20 Hb_006663_080 0.1499880464 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_004445_030 Hb_004445_030 Hb_054127_020 Hb_054127_020 Hb_004445_030--Hb_054127_020 Hb_047923_030 Hb_047923_030 Hb_004445_030--Hb_047923_030 Hb_002576_010 Hb_002576_010 Hb_004445_030--Hb_002576_010 Hb_004052_130 Hb_004052_130 Hb_004445_030--Hb_004052_130 Hb_009355_010 Hb_009355_010 Hb_004445_030--Hb_009355_010 Hb_144838_010 Hb_144838_010 Hb_004445_030--Hb_144838_010 Hb_006356_030 Hb_006356_030 Hb_054127_020--Hb_006356_030 Hb_000405_010 Hb_000405_010 Hb_054127_020--Hb_000405_010 Hb_000923_110 Hb_000923_110 Hb_054127_020--Hb_000923_110 Hb_054127_020--Hb_002576_010 Hb_054127_020--Hb_047923_030 Hb_047923_030--Hb_002576_010 Hb_134377_070 Hb_134377_070 Hb_047923_030--Hb_134377_070 Hb_000142_090 Hb_000142_090 Hb_047923_030--Hb_000142_090 Hb_181013_010 Hb_181013_010 Hb_047923_030--Hb_181013_010 Hb_159124_010 Hb_159124_010 Hb_047923_030--Hb_159124_010 Hb_005432_020 Hb_005432_020 Hb_047923_030--Hb_005432_020 Hb_002576_010--Hb_134377_070 Hb_002576_010--Hb_000142_090 Hb_002576_010--Hb_181013_010 Hb_002576_010--Hb_005432_020 Hb_002576_010--Hb_159124_010 Hb_004052_130--Hb_009355_010 Hb_000311_130 Hb_000311_130 Hb_004052_130--Hb_000311_130 Hb_010623_010 Hb_010623_010 Hb_004052_130--Hb_010623_010 Hb_000710_100 Hb_000710_100 Hb_004052_130--Hb_000710_100 Hb_002260_210 Hb_002260_210 Hb_004052_130--Hb_002260_210 Hb_027917_010 Hb_027917_010 Hb_009355_010--Hb_027917_010 Hb_004375_020 Hb_004375_020 Hb_009355_010--Hb_004375_020 Hb_000373_140 Hb_000373_140 Hb_009355_010--Hb_000373_140 Hb_004987_040 Hb_004987_040 Hb_009355_010--Hb_004987_040 Hb_007575_010 Hb_007575_010 Hb_144838_010--Hb_007575_010 Hb_017640_010 Hb_017640_010 Hb_144838_010--Hb_017640_010 Hb_002598_030 Hb_002598_030 Hb_144838_010--Hb_002598_030 Hb_000672_130 Hb_000672_130 Hb_144838_010--Hb_000672_130 Hb_147604_010 Hb_147604_010 Hb_144838_010--Hb_147604_010 Hb_001250_030 Hb_001250_030 Hb_144838_010--Hb_001250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0455358 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0198578 0.396894

CAGE analysis