Hb_171685_060

Information

Type -
Description -
Location Contig171685: 50625-53589
Sequence    

Annotation

kegg
ID pxb:103935049
description cytochrome c oxidase subunit 2
nr
ID XP_009343093.1
description PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
swissprot
ID P92559
description Uncharacterized mitochondrial protein AtMg01280 OS=Arabidopsis thaliana GN=AtMg01280 PE=3 SV=1
trembl
ID J7MFY4
description Cytochrome c oxidase subunit 2 OS=Malus domestica GN=cox2 PE=3 SV=1
Gene Ontology
ID GO:0005743
description cytochrome c oxidase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16073: 52790-53177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171685_060 0.0 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
2 Hb_012163_050 0.0787985037 - - ATPase subunit [Medicago truncatula]
3 Hb_156746_010 0.1036812705 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
4 Hb_004643_010 0.1050882604 - - cytochrome B, putative [Ricinus communis]
5 Hb_006040_030 0.1068981037 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
6 Hb_013420_020 0.1164328391 - - conserved hypothetical protein [Ricinus communis]
7 Hb_041813_030 0.123797679 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
8 Hb_042463_030 0.1251607159 - - unknown [Lotus japonicus]
9 Hb_004208_040 0.1263874819 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
10 Hb_171685_080 0.1272520915 - - unknown [Allium cepa]
11 Hb_006040_020 0.1320302727 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
12 Hb_013420_050 0.1330496664 - - hypothetical protein (mitochondrion) [Vicia faba]
13 Hb_034168_070 0.1344264408 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
14 Hb_000373_140 0.1381425252 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
15 Hb_004987_040 0.1383725143 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_000879_260 0.141475738 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
17 Hb_008085_020 0.1422718359 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
18 Hb_042463_070 0.143376638 - - 60S ribosomal protein L16, putative [Ricinus communis]
19 Hb_079902_010 0.1478258698 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
20 Hb_077242_020 0.1483727926 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]

Gene co-expression network

sample Hb_171685_060 Hb_171685_060 Hb_012163_050 Hb_012163_050 Hb_171685_060--Hb_012163_050 Hb_156746_010 Hb_156746_010 Hb_171685_060--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_171685_060--Hb_004643_010 Hb_006040_030 Hb_006040_030 Hb_171685_060--Hb_006040_030 Hb_013420_020 Hb_013420_020 Hb_171685_060--Hb_013420_020 Hb_041813_030 Hb_041813_030 Hb_171685_060--Hb_041813_030 Hb_012163_050--Hb_013420_020 Hb_012163_050--Hb_156746_010 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_012163_050--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_012163_050--Hb_042463_070 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_013420_020 Hb_034168_070 Hb_034168_070 Hb_004643_010--Hb_034168_070 Hb_004643_010--Hb_156746_010 Hb_004643_010--Hb_012163_050 Hb_001508_010 Hb_001508_010 Hb_004643_010--Hb_001508_010 Hb_004643_010--Hb_006040_030 Hb_006040_010 Hb_006040_010 Hb_006040_030--Hb_006040_010 Hb_006040_020 Hb_006040_020 Hb_006040_030--Hb_006040_020 Hb_006040_030--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_006040_030--Hb_077242_020 Hb_013420_020--Hb_006040_030 Hb_027357_010 Hb_027357_010 Hb_013420_020--Hb_027357_010 Hb_171685_080 Hb_171685_080 Hb_013420_020--Hb_171685_080 Hb_041813_030--Hb_042463_070 Hb_041813_030--Hb_077242_020 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_041813_030--Hb_013420_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0354758 0.170151 0.0542596 0.0114007 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0325012 0 0.143922 0.0408445 6.08906

CAGE analysis