Hb_042463_070

Information

Type -
Description -
Location Contig42463: 32761-34903
Sequence    

Annotation

kegg
ID rcu:RCOM_2145580
description 60S ribosomal protein L16, putative
nr
ID XP_002535312.1
description 60S ribosomal protein L16, putative [Ricinus communis]
swissprot
ID Q04716
description Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1
trembl
ID B9TAP3
description 60S ribosomal protein L16, putative OS=Ricinus communis GN=RCOM_2145580 PE=3 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein s3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042463_070 0.0 - - 60S ribosomal protein L16, putative [Ricinus communis]
2 Hb_041813_030 0.0760733306 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
3 Hb_156746_010 0.0814767096 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
4 Hb_077242_020 0.096841141 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
5 Hb_013420_050 0.0985156129 - - hypothetical protein (mitochondrion) [Vicia faba]
6 Hb_006040_030 0.101475024 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
7 Hb_012163_050 0.110925205 - - ATPase subunit [Medicago truncatula]
8 Hb_000920_020 0.1191196424 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
9 Hb_062192_030 0.1272384726 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
10 Hb_034168_070 0.127795004 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
11 Hb_006040_010 0.1280571727 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
12 Hb_013420_020 0.1297595033 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001490_020 0.1302750922 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_006040_020 0.1352552175 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
15 Hb_000879_260 0.1359914595 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
16 Hb_042463_030 0.1371715322 - - unknown [Lotus japonicus]
17 Hb_189099_020 0.1395387277 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
18 Hb_042463_020 0.139689273 - - conserved hypothetical protein [Ricinus communis]
19 Hb_171685_060 0.143376638 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
20 Hb_034168_010 0.1447076453 - - hypothetical protein [Azospirillum sp. CAG:260]

Gene co-expression network

sample Hb_042463_070 Hb_042463_070 Hb_041813_030 Hb_041813_030 Hb_042463_070--Hb_041813_030 Hb_156746_010 Hb_156746_010 Hb_042463_070--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_042463_070--Hb_077242_020 Hb_013420_050 Hb_013420_050 Hb_042463_070--Hb_013420_050 Hb_006040_030 Hb_006040_030 Hb_042463_070--Hb_006040_030 Hb_012163_050 Hb_012163_050 Hb_042463_070--Hb_012163_050 Hb_041813_030--Hb_156746_010 Hb_041813_030--Hb_077242_020 Hb_041813_030--Hb_006040_030 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_041813_030--Hb_013420_050 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020 Hb_077242_020--Hb_006040_030 Hb_079902_010 Hb_079902_010 Hb_077242_020--Hb_079902_010 Hb_101462_010 Hb_101462_010 Hb_077242_020--Hb_101462_010 Hb_077242_020--Hb_156746_010 Hb_006040_020 Hb_006040_020 Hb_013420_050--Hb_006040_020 Hb_171685_080 Hb_171685_080 Hb_013420_050--Hb_171685_080 Hb_006040_010 Hb_006040_010 Hb_013420_050--Hb_006040_010 Hb_013420_050--Hb_006040_030 Hb_006040_030--Hb_006040_010 Hb_006040_030--Hb_006040_020 Hb_006040_030--Hb_012163_050 Hb_171685_060 Hb_171685_060 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_013420_020 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.891285 2.71249 1.45127 1.74476 0.955008 0.821351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0478998 0.0753763 1.89111 3.9455 112.361

CAGE analysis