Hb_034168_070

Information

Type -
Description -
Location Contig34168: 56665-60408
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp35
description atp1; ATP synthase F1 subunit 1
nr
ID BAO50884.1
description ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
swissprot
ID P18260
description ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1
trembl
ID W6JLN6
description ATP synthase subunit alpha OS=Hevea brasiliensis GN=atp1 PE=3 SV=1
Gene Ontology
ID GO:0005743
description atp synthase f1 subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034168_070 0.0 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
2 Hb_156746_010 0.1088479125 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
3 Hb_042463_020 0.1117766396 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004643_010 0.1136396227 - - cytochrome B, putative [Ricinus communis]
5 Hb_041813_030 0.1258973141 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
6 Hb_042463_070 0.127795004 - - 60S ribosomal protein L16, putative [Ricinus communis]
7 Hb_012163_050 0.1316890238 - - ATPase subunit [Medicago truncatula]
8 Hb_062192_030 0.1326897101 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
9 Hb_171685_060 0.1344264408 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
10 Hb_006040_030 0.1364040507 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
11 Hb_062273_010 0.1380661448 - - ATP synthase F0 subunit 9 [Chara vulgaris]
12 Hb_179142_010 0.1388184602 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
13 Hb_189099_020 0.1394638121 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
14 Hb_034168_010 0.140061232 - - hypothetical protein [Azospirillum sp. CAG:260]
15 Hb_077242_020 0.1413613377 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
16 Hb_104735_020 0.1444983352 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
17 Hb_072212_020 0.1457916734 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
18 Hb_027638_010 0.1483381105 - - Protein KES1, putative [Ricinus communis]
19 Hb_051924_010 0.1529159492 - - BnaA01g34100D [Brassica napus]
20 Hb_002551_030 0.1537838013 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_034168_070 Hb_034168_070 Hb_156746_010 Hb_156746_010 Hb_034168_070--Hb_156746_010 Hb_042463_020 Hb_042463_020 Hb_034168_070--Hb_042463_020 Hb_004643_010 Hb_004643_010 Hb_034168_070--Hb_004643_010 Hb_041813_030 Hb_041813_030 Hb_034168_070--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_034168_070--Hb_042463_070 Hb_012163_050 Hb_012163_050 Hb_034168_070--Hb_012163_050 Hb_006040_030 Hb_006040_030 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020 Hb_042463_020--Hb_156746_010 Hb_042463_020--Hb_012163_050 Hb_104735_020 Hb_104735_020 Hb_042463_020--Hb_104735_020 Hb_062273_010 Hb_062273_010 Hb_042463_020--Hb_062273_010 Hb_042463_020--Hb_042463_070 Hb_171685_060 Hb_171685_060 Hb_004643_010--Hb_171685_060 Hb_004643_010--Hb_156746_010 Hb_004643_010--Hb_012163_050 Hb_001508_010 Hb_001508_010 Hb_004643_010--Hb_001508_010 Hb_004643_010--Hb_006040_030 Hb_041813_030--Hb_042463_070 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_041813_030--Hb_006040_030 Hb_062192_030 Hb_062192_030 Hb_041813_030--Hb_062192_030 Hb_041813_030--Hb_013420_050 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030 Hb_042463_070--Hb_012163_050 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_013420_020 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_012163_050--Hb_006040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.37153 0.566754 0.468302 0.0792081 0.0462126 0.1093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0176531 0.013891 0.370746 0.132387 13.3464

CAGE analysis