Hb_042463_020

Information

Type -
Description -
Location Contig42463: 16302-17944
Sequence    

Annotation

kegg
ID rcu:RCOM_1113280
description hypothetical protein
nr
ID XP_002531735.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0G6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1113280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41986: 18143-18490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042463_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_034168_070 0.1117766396 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
3 Hb_156746_010 0.133426664 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
4 Hb_012163_050 0.1338111411 - - ATPase subunit [Medicago truncatula]
5 Hb_104735_020 0.1363999128 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
6 Hb_062273_010 0.1379481471 - - ATP synthase F0 subunit 9 [Chara vulgaris]
7 Hb_042463_070 0.139689273 - - 60S ribosomal protein L16, putative [Ricinus communis]
8 Hb_072212_020 0.1420614337 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
9 Hb_013420_010 0.1470860887 - - conserved hypothetical protein [Ricinus communis]
10 Hb_013420_020 0.1505641744 - - conserved hypothetical protein [Ricinus communis]
11 Hb_013420_090 0.1517893837 - - BnaCnng13090D [Brassica napus]
12 Hb_004643_010 0.1613171389 - - cytochrome B, putative [Ricinus communis]
13 Hb_041813_030 0.1645901104 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
14 Hb_042463_030 0.1646195976 - - unknown [Lotus japonicus]
15 Hb_171685_060 0.1652823635 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
16 Hb_034168_010 0.1691582859 - - hypothetical protein [Azospirillum sp. CAG:260]
17 Hb_006040_030 0.1698083582 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
18 Hb_013420_050 0.1728677839 - - hypothetical protein (mitochondrion) [Vicia faba]
19 Hb_062192_030 0.1739233031 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
20 Hb_027357_010 0.1759378481 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_042463_020 Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_042463_020--Hb_034168_070 Hb_156746_010 Hb_156746_010 Hb_042463_020--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_042463_020--Hb_012163_050 Hb_104735_020 Hb_104735_020 Hb_042463_020--Hb_104735_020 Hb_062273_010 Hb_062273_010 Hb_042463_020--Hb_062273_010 Hb_042463_070 Hb_042463_070 Hb_042463_020--Hb_042463_070 Hb_034168_070--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_034168_070--Hb_004643_010 Hb_041813_030 Hb_041813_030 Hb_034168_070--Hb_041813_030 Hb_034168_070--Hb_042463_070 Hb_034168_070--Hb_012163_050 Hb_006040_030 Hb_006040_030 Hb_156746_010--Hb_006040_030 Hb_156746_010--Hb_042463_070 Hb_156746_010--Hb_041813_030 Hb_013420_050 Hb_013420_050 Hb_156746_010--Hb_013420_050 Hb_156746_010--Hb_012163_050 Hb_013420_020 Hb_013420_020 Hb_156746_010--Hb_013420_020 Hb_171685_060 Hb_171685_060 Hb_012163_050--Hb_171685_060 Hb_012163_050--Hb_013420_020 Hb_042463_030 Hb_042463_030 Hb_012163_050--Hb_042463_030 Hb_012163_050--Hb_006040_030 Hb_012163_050--Hb_042463_070 Hb_104735_020--Hb_034168_070 Hb_104735_020--Hb_062273_010 Hb_000518_040 Hb_000518_040 Hb_104735_020--Hb_000518_040 Hb_072212_020 Hb_072212_020 Hb_104735_020--Hb_072212_020 Hb_034168_010 Hb_034168_010 Hb_104735_020--Hb_034168_010 Hb_062273_010--Hb_072212_020 Hb_062273_010--Hb_034168_070 Hb_062192_030 Hb_062192_030 Hb_062273_010--Hb_062192_030 Hb_189099_020 Hb_189099_020 Hb_062273_010--Hb_189099_020 Hb_042463_070--Hb_041813_030 Hb_077242_020 Hb_077242_020 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0281834 0.156107 0.0636143 0 0.0282989 0.0249067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0924246 0.0618081 2.257

CAGE analysis