Hb_171685_040

Information

Type -
Description -
Location Contig171685: 17287-17726
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp20
description rps13; ribosomal protein S13
nr
ID BAO50894.1
description ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
swissprot
ID P15758
description Ribosomal protein S13, mitochondrial OS=Oenothera berteroana GN=RPS13 PE=3 SV=2
trembl
ID W6JLP5
description Ribosomal protein S13 OS=Hevea brasiliensis GN=rps13 PE=3 SV=1
Gene Ontology
ID GO:0005763
description ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171685_040 0.0 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
2 Hb_006040_050 0.1351357133 - - conserved hypothetical protein [Ricinus communis]
3 Hb_102602_030 0.140090192 - - hypothetical protein (mitochondrion) [Vicia faba]
4 Hb_027357_010 0.1404006954 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_013420_010 0.1494702404 - - conserved hypothetical protein [Ricinus communis]
6 Hb_072212_020 0.1712490392 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
7 Hb_005742_010 0.173726259 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_171685_020 0.1792746743 - - conserved hypothetical protein [Ricinus communis]
9 Hb_062192_060 0.1812503137 - - maturase (mitochondrion) [Hevea brasiliensis]
10 Hb_171685_030 0.1848979839 - - URF-1 [Citrullus lanatus]
11 Hb_002482_050 0.1869487037 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
12 Hb_088080_030 0.1878649892 - - ribosomal protein S4 [Hevea brasiliensis]
13 Hb_013420_120 0.1923067077 - - -
14 Hb_000159_020 0.1947345128 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
15 Hb_012163_050 0.1975699568 - - ATPase subunit [Medicago truncatula]
16 Hb_042463_030 0.1979840139 - - unknown [Lotus japonicus]
17 Hb_102602_010 0.1980299426 - - orf175 (mitochondrion) [Panax ginseng]
18 Hb_041813_030 0.2002443747 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
19 Hb_104735_010 0.2032799769 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
20 Hb_002687_070 0.2045620601 - - polyprotein [Ananas comosus]

Gene co-expression network

sample Hb_171685_040 Hb_171685_040 Hb_006040_050 Hb_006040_050 Hb_171685_040--Hb_006040_050 Hb_102602_030 Hb_102602_030 Hb_171685_040--Hb_102602_030 Hb_027357_010 Hb_027357_010 Hb_171685_040--Hb_027357_010 Hb_013420_010 Hb_013420_010 Hb_171685_040--Hb_013420_010 Hb_072212_020 Hb_072212_020 Hb_171685_040--Hb_072212_020 Hb_005742_010 Hb_005742_010 Hb_171685_040--Hb_005742_010 Hb_006040_050--Hb_005742_010 Hb_171685_020 Hb_171685_020 Hb_006040_050--Hb_171685_020 Hb_002687_070 Hb_002687_070 Hb_006040_050--Hb_002687_070 Hb_002482_050 Hb_002482_050 Hb_006040_050--Hb_002482_050 Hb_013420_120 Hb_013420_120 Hb_006040_050--Hb_013420_120 Hb_102602_010 Hb_102602_010 Hb_102602_030--Hb_102602_010 Hb_171685_030 Hb_171685_030 Hb_102602_030--Hb_171685_030 Hb_102602_030--Hb_027357_010 Hb_062192_030 Hb_062192_030 Hb_102602_030--Hb_062192_030 Hb_041813_030 Hb_041813_030 Hb_102602_030--Hb_041813_030 Hb_013420_020 Hb_013420_020 Hb_027357_010--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_027357_010--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_027357_010--Hb_012163_050 Hb_027357_010--Hb_041813_030 Hb_027357_010--Hb_013420_010 Hb_042463_020 Hb_042463_020 Hb_013420_010--Hb_042463_020 Hb_013420_010--Hb_072212_020 Hb_034168_070 Hb_034168_070 Hb_013420_010--Hb_034168_070 Hb_013420_010--Hb_012163_050 Hb_062273_010 Hb_062273_010 Hb_072212_020--Hb_062273_010 Hb_072212_020--Hb_062192_030 Hb_072212_020--Hb_042463_020 Hb_088080_030 Hb_088080_030 Hb_072212_020--Hb_088080_030 Hb_189099_020 Hb_189099_020 Hb_072212_020--Hb_189099_020 Hb_072212_020--Hb_034168_070 Hb_005742_010--Hb_171685_030 Hb_005742_010--Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_005742_010--Hb_062192_060 Hb_000245_120 Hb_000245_120 Hb_005742_010--Hb_000245_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.47371 0.12639 1.04463 0.236378 0.409661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.289373 5.15845 0.984509 37.3767

CAGE analysis