Hb_062192_060

Information

Type -
Description -
Location Contig62192: 31508-34664
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp10
description matR; maturase-related protein
nr
ID BAO50890.1
description maturase (mitochondrion) [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID W6JLQ0
description Maturase OS=Hevea brasiliensis GN=matR PE=4 SV=1
Gene Ontology
ID GO:0006397
description maturase partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51538: 32031-34555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062192_060 0.0 - - maturase (mitochondrion) [Hevea brasiliensis]
2 Hb_002482_050 0.1269978444 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
3 Hb_041813_050 0.1424814076 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
4 Hb_005154_090 0.1631404072 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_003362_020 0.1702463864 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
6 Hb_171685_030 0.1713753646 - - URF-1 [Citrullus lanatus]
7 Hb_003746_020 0.178927329 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
8 Hb_171685_040 0.1812503137 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
9 Hb_000710_160 0.1860739796 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_003375_050 0.1865534229 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_088080_030 0.1889520952 - - ribosomal protein S4 [Hevea brasiliensis]
12 Hb_034197_020 0.198036927 - - hypothetical protein VITISV_041099 [Vitis vinifera]
13 Hb_005742_010 0.2066922934 - - hypothetical protein, partial [Pseudomonas fluorescens]
14 Hb_102602_030 0.20831721 - - hypothetical protein (mitochondrion) [Vicia faba]
15 Hb_006040_050 0.2091522993 - - conserved hypothetical protein [Ricinus communis]
16 Hb_072212_020 0.2094397916 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
17 Hb_000614_270 0.2097573598 - - -
18 Hb_062192_030 0.2098805562 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
19 Hb_002687_070 0.2102207453 - - polyprotein [Ananas comosus]
20 Hb_102602_020 0.2124859141 - - hypothetical protein B456_001G166300 [Gossypium raimondii]

Gene co-expression network

sample Hb_062192_060 Hb_062192_060 Hb_002482_050 Hb_002482_050 Hb_062192_060--Hb_002482_050 Hb_041813_050 Hb_041813_050 Hb_062192_060--Hb_041813_050 Hb_005154_090 Hb_005154_090 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_034197_020 Hb_034197_020 Hb_002482_050--Hb_034197_020 Hb_013420_090 Hb_013420_090 Hb_002482_050--Hb_013420_090 Hb_006040_050 Hb_006040_050 Hb_002482_050--Hb_006040_050 Hb_027357_010 Hb_027357_010 Hb_002482_050--Hb_027357_010 Hb_002687_070 Hb_002687_070 Hb_002482_050--Hb_002687_070 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_005154_090--Hb_003375_050 Hb_041813_060 Hb_041813_060 Hb_005154_090--Hb_041813_060 Hb_062192_030 Hb_062192_030 Hb_005154_090--Hb_062192_030 Hb_041813_040 Hb_041813_040 Hb_005154_090--Hb_041813_040 Hb_003362_020--Hb_041813_050 Hb_088080_030 Hb_088080_030 Hb_003362_020--Hb_088080_030 Hb_062273_010 Hb_062273_010 Hb_003362_020--Hb_062273_010 Hb_004987_030 Hb_004987_030 Hb_003362_020--Hb_004987_030 Hb_072212_020 Hb_072212_020 Hb_003362_020--Hb_072212_020 Hb_000159_020 Hb_000159_020 Hb_171685_030--Hb_000159_020 Hb_102602_030 Hb_102602_030 Hb_171685_030--Hb_102602_030 Hb_034455_010 Hb_034455_010 Hb_171685_030--Hb_034455_010 Hb_171685_040 Hb_171685_040 Hb_171685_030--Hb_171685_040 Hb_005742_010 Hb_005742_010 Hb_171685_030--Hb_005742_010 Hb_003746_020--Hb_088080_030 Hb_000920_020 Hb_000920_020 Hb_003746_020--Hb_000920_020 Hb_000710_160 Hb_000710_160 Hb_003746_020--Hb_000710_160 Hb_189099_020 Hb_189099_020 Hb_003746_020--Hb_189099_020 Hb_154430_010 Hb_154430_010 Hb_003746_020--Hb_154430_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268803 0.833683 0.214478 0.950172 0.0491004 0.132883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0877709 2.3169 2.75546 19.6781

CAGE analysis