Hb_041813_010

Information

Type -
Description -
Location Contig41813: 1789-3718
Sequence    

Annotation

kegg
ID rcu:RCOM_2007240
description hypothetical protein
nr
ID XP_002534684.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T8W5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2007240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41355: 1360-3955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_041813_050 0.1744355866 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
3 Hb_102602_020 0.183725709 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
4 Hb_000076_050 0.191633771 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
5 Hb_007520_070 0.1983034568 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
6 Hb_000454_160 0.2075539611 - - amidophosphoribosyltransferase, putative [Ricinus communis]
7 Hb_027010_030 0.2085801168 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_012092_080 0.2141299339 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
9 Hb_006405_040 0.2223568694 - - hypothetical protein VITISV_026680 [Vitis vinifera]
10 Hb_041813_040 0.2224968396 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
11 Hb_012404_080 0.222659555 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
12 Hb_003362_020 0.2233151004 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
13 Hb_053998_020 0.2253986288 - - -
14 Hb_062192_060 0.2285347348 - - maturase (mitochondrion) [Hevea brasiliensis]
15 Hb_000574_330 0.229685346 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
16 Hb_005154_090 0.2329027136 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_011609_210 0.2342030502 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
18 Hb_012463_010 0.24067601 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
19 Hb_000529_140 0.2473983427 - - conserved hypothetical protein [Ricinus communis]
20 Hb_173808_010 0.247915323 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_041813_010 Hb_041813_010 Hb_041813_050 Hb_041813_050 Hb_041813_010--Hb_041813_050 Hb_102602_020 Hb_102602_020 Hb_041813_010--Hb_102602_020 Hb_000076_050 Hb_000076_050 Hb_041813_010--Hb_000076_050 Hb_007520_070 Hb_007520_070 Hb_041813_010--Hb_007520_070 Hb_000454_160 Hb_000454_160 Hb_041813_010--Hb_000454_160 Hb_027010_030 Hb_027010_030 Hb_041813_010--Hb_027010_030 Hb_062192_060 Hb_062192_060 Hb_041813_050--Hb_062192_060 Hb_005154_090 Hb_005154_090 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_041813_040 Hb_041813_040 Hb_102602_020--Hb_041813_040 Hb_006405_040 Hb_006405_040 Hb_102602_020--Hb_006405_040 Hb_001385_070 Hb_001385_070 Hb_102602_020--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_102602_020--Hb_127552_050 Hb_000820_100 Hb_000820_100 Hb_102602_020--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_102602_020--Hb_007543_020 Hb_000076_050--Hb_007520_070 Hb_003327_020 Hb_003327_020 Hb_000076_050--Hb_003327_020 Hb_000856_320 Hb_000856_320 Hb_000076_050--Hb_000856_320 Hb_000958_100 Hb_000958_100 Hb_000076_050--Hb_000958_100 Hb_012305_110 Hb_012305_110 Hb_000076_050--Hb_012305_110 Hb_062317_020 Hb_062317_020 Hb_007520_070--Hb_062317_020 Hb_000968_070 Hb_000968_070 Hb_007520_070--Hb_000968_070 Hb_001320_020 Hb_001320_020 Hb_007520_070--Hb_001320_020 Hb_007520_070--Hb_102602_020 Hb_012404_080 Hb_012404_080 Hb_000454_160--Hb_012404_080 Hb_011609_210 Hb_011609_210 Hb_000454_160--Hb_011609_210 Hb_018272_050 Hb_018272_050 Hb_000454_160--Hb_018272_050 Hb_000977_150 Hb_000977_150 Hb_000454_160--Hb_000977_150 Hb_002518_180 Hb_002518_180 Hb_000454_160--Hb_002518_180 Hb_000414_180 Hb_000414_180 Hb_000454_160--Hb_000414_180 Hb_032718_010 Hb_032718_010 Hb_027010_030--Hb_032718_010 Hb_026698_030 Hb_026698_030 Hb_027010_030--Hb_026698_030 Hb_053079_010 Hb_053079_010 Hb_027010_030--Hb_053079_010 Hb_067345_020 Hb_067345_020 Hb_027010_030--Hb_067345_020 Hb_017098_060 Hb_017098_060 Hb_027010_030--Hb_017098_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0925364 2.736 0.414965 1.95536 0.449078 0.378463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0743841 2.74918 2.61683 12.0294

CAGE analysis