Hb_053079_010

Information

Type -
Description -
Location Contig53079: 10511-20380
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13197.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QEC8
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003676
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053079_010 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_013080_010 0.2186455335 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_024411_010 0.2192135408 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_006040_050 0.231917822 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005466_010 0.244624233 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
6 Hb_027010_030 0.2492898301 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_151320_010 0.2540061187 - - -
8 Hb_141990_020 0.2561882986 - - RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Capsid protein; Short=CP; Contains: RecName: Full=Aspartic protease; Short=PR; Contains: RecName: Full=Reverse transcriptase; Short=RT [Petunia vein clearing virus isolate Hohn]
9 Hb_000856_320 0.2572156882 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
10 Hb_002687_070 0.2581948539 - - polyprotein [Ananas comosus]
11 Hb_053998_020 0.2606813486 - - -
12 Hb_171685_020 0.260724853 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013420_120 0.2646612961 - - -
14 Hb_072212_020 0.2713569054 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
15 Hb_005742_010 0.27260661 - - hypothetical protein, partial [Pseudomonas fluorescens]
16 Hb_013420_010 0.2748303631 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004195_220 0.2808883225 - - hypothetical protein PRUPE_ppa005288mg [Prunus persica]
18 Hb_170559_010 0.283059843 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_171685_040 0.2855302544 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
20 Hb_017075_020 0.2870840151 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]

Gene co-expression network

sample Hb_053079_010 Hb_053079_010 Hb_013080_010 Hb_013080_010 Hb_053079_010--Hb_013080_010 Hb_024411_010 Hb_024411_010 Hb_053079_010--Hb_024411_010 Hb_006040_050 Hb_006040_050 Hb_053079_010--Hb_006040_050 Hb_005466_010 Hb_005466_010 Hb_053079_010--Hb_005466_010 Hb_027010_030 Hb_027010_030 Hb_053079_010--Hb_027010_030 Hb_151320_010 Hb_151320_010 Hb_053079_010--Hb_151320_010 Hb_013080_010--Hb_024411_010 Hb_013080_010--Hb_027010_030 Hb_033594_050 Hb_033594_050 Hb_013080_010--Hb_033594_050 Hb_005016_110 Hb_005016_110 Hb_013080_010--Hb_005016_110 Hb_001206_010 Hb_001206_010 Hb_013080_010--Hb_001206_010 Hb_086607_010 Hb_086607_010 Hb_024411_010--Hb_086607_010 Hb_002687_070 Hb_002687_070 Hb_024411_010--Hb_002687_070 Hb_000518_040 Hb_000518_040 Hb_024411_010--Hb_000518_040 Hb_171685_020 Hb_171685_020 Hb_024411_010--Hb_171685_020 Hb_005742_010 Hb_005742_010 Hb_006040_050--Hb_005742_010 Hb_171685_040 Hb_171685_040 Hb_006040_050--Hb_171685_040 Hb_006040_050--Hb_171685_020 Hb_006040_050--Hb_002687_070 Hb_002482_050 Hb_002482_050 Hb_006040_050--Hb_002482_050 Hb_013420_120 Hb_013420_120 Hb_006040_050--Hb_013420_120 Hb_141990_020 Hb_141990_020 Hb_005466_010--Hb_141990_020 Hb_117001_010 Hb_117001_010 Hb_005466_010--Hb_117001_010 Hb_003327_020 Hb_003327_020 Hb_005466_010--Hb_003327_020 Hb_000856_320 Hb_000856_320 Hb_005466_010--Hb_000856_320 Hb_005466_010--Hb_000518_040 Hb_062273_010 Hb_062273_010 Hb_005466_010--Hb_062273_010 Hb_032718_010 Hb_032718_010 Hb_027010_030--Hb_032718_010 Hb_041813_010 Hb_041813_010 Hb_027010_030--Hb_041813_010 Hb_026698_030 Hb_026698_030 Hb_027010_030--Hb_026698_030 Hb_067345_020 Hb_067345_020 Hb_027010_030--Hb_067345_020 Hb_017098_060 Hb_017098_060 Hb_027010_030--Hb_017098_060 Hb_151320_010--Hb_013420_120 Hb_004195_220 Hb_004195_220 Hb_151320_010--Hb_004195_220 Hb_000987_110 Hb_000987_110 Hb_151320_010--Hb_000987_110 Hb_141425_010 Hb_141425_010 Hb_151320_010--Hb_141425_010 Hb_123396_010 Hb_123396_010 Hb_151320_010--Hb_123396_010 Hb_151320_010--Hb_005742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00352613 0.0463429 0.00534392 0.00477925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0363051 0.00248523 0.121561

CAGE analysis