Hb_024411_010

Information

Type -
Description -
Location Contig24411: 6615-9448
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024411_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_013080_010 0.1769259869 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_053079_010 0.2192135408 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_086607_010 0.2452872907 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_002687_070 0.2556920863 - - polyprotein [Ananas comosus]
6 Hb_000518_040 0.2588444911 - - -
7 Hb_171685_020 0.2615372017 - - conserved hypothetical protein [Ricinus communis]
8 Hb_144027_010 0.2664175711 - - -
9 Hb_001206_010 0.2680685698 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
10 Hb_117001_010 0.2684722038 - - -
11 Hb_003406_030 0.2721868305 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
12 Hb_005016_110 0.2772689818 - - -
13 Hb_002729_020 0.2799913761 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
14 Hb_045785_010 0.2811167454 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
15 Hb_003900_040 0.2830539994 - - hypothetical protein [Lotus japonicus]
16 Hb_102602_020 0.2856164451 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
17 Hb_008642_050 0.2875393736 - - -
18 Hb_000856_320 0.2901112903 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
19 Hb_006405_040 0.2927890951 - - hypothetical protein VITISV_026680 [Vitis vinifera]
20 Hb_041813_010 0.293589373 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_024411_010 Hb_024411_010 Hb_013080_010 Hb_013080_010 Hb_024411_010--Hb_013080_010 Hb_053079_010 Hb_053079_010 Hb_024411_010--Hb_053079_010 Hb_086607_010 Hb_086607_010 Hb_024411_010--Hb_086607_010 Hb_002687_070 Hb_002687_070 Hb_024411_010--Hb_002687_070 Hb_000518_040 Hb_000518_040 Hb_024411_010--Hb_000518_040 Hb_171685_020 Hb_171685_020 Hb_024411_010--Hb_171685_020 Hb_013080_010--Hb_053079_010 Hb_027010_030 Hb_027010_030 Hb_013080_010--Hb_027010_030 Hb_033594_050 Hb_033594_050 Hb_013080_010--Hb_033594_050 Hb_005016_110 Hb_005016_110 Hb_013080_010--Hb_005016_110 Hb_001206_010 Hb_001206_010 Hb_013080_010--Hb_001206_010 Hb_006040_050 Hb_006040_050 Hb_053079_010--Hb_006040_050 Hb_005466_010 Hb_005466_010 Hb_053079_010--Hb_005466_010 Hb_053079_010--Hb_027010_030 Hb_151320_010 Hb_151320_010 Hb_053079_010--Hb_151320_010 Hb_012305_090 Hb_012305_090 Hb_086607_010--Hb_012305_090 Hb_005396_060 Hb_005396_060 Hb_086607_010--Hb_005396_060 Hb_001282_030 Hb_001282_030 Hb_086607_010--Hb_001282_030 Hb_002729_020 Hb_002729_020 Hb_086607_010--Hb_002729_020 Hb_000711_020 Hb_000711_020 Hb_086607_010--Hb_000711_020 Hb_002687_070--Hb_171685_020 Hb_002687_070--Hb_006040_050 Hb_144027_010 Hb_144027_010 Hb_002687_070--Hb_144027_010 Hb_013420_090 Hb_013420_090 Hb_002687_070--Hb_013420_090 Hb_001383_080 Hb_001383_080 Hb_002687_070--Hb_001383_080 Hb_001250_030 Hb_001250_030 Hb_002687_070--Hb_001250_030 Hb_104735_020 Hb_104735_020 Hb_000518_040--Hb_104735_020 Hb_117001_010 Hb_117001_010 Hb_000518_040--Hb_117001_010 Hb_000518_040--Hb_144027_010 Hb_006405_040 Hb_006405_040 Hb_000518_040--Hb_006405_040 Hb_062273_010 Hb_062273_010 Hb_000518_040--Hb_062273_010 Hb_072212_020 Hb_072212_020 Hb_000518_040--Hb_072212_020 Hb_171685_020--Hb_006040_050 Hb_013420_120 Hb_013420_120 Hb_171685_020--Hb_013420_120 Hb_171685_020--Hb_013420_090 Hb_171685_040 Hb_171685_040 Hb_171685_020--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_171685_020--Hb_013420_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0587127 0.00603822 0 0 0.00676389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0263473 0.0109747 0.117511

CAGE analysis