Hb_033594_050

Information

Type -
Description -
Location Contig33594: 36275-37684
Sequence    

Annotation

kegg
ID rcu:RCOM_0581160
description cyclin d, putative
nr
ID XP_012079589.1
description PREDICTED: cyclin-D4-1-like [Jatropha curcas]
swissprot
ID P42751
description Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3
trembl
ID A0A067KJT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12550 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-d1-1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_050 0.0 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
2 Hb_000349_160 0.1719881023 - - PREDICTED: geraniol 8-hydroxylase-like [Citrus sinensis]
3 Hb_005016_110 0.2002344266 - - -
4 Hb_002585_060 0.2106311793 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
5 Hb_004063_010 0.2110894555 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000028_270 0.2127718897 - - -
7 Hb_058095_030 0.2133965581 - - -
8 Hb_118046_010 0.216512821 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
9 Hb_003727_060 0.2219081783 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_048476_070 0.2240228986 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003442_120 0.2247772971 - - hypothetical protein VITISV_019818 [Vitis vinifera]
12 Hb_002815_040 0.2356700034 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
13 Hb_011242_070 0.2360294114 - - beta-cyanoalanine synthase [Hevea brasiliensis]
14 Hb_000236_430 0.2370837517 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
15 Hb_005765_020 0.2395465672 - - -
16 Hb_002729_020 0.2432243102 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
17 Hb_004021_120 0.2450164642 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_001863_410 0.2466440686 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_130579_050 0.2548529883 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
20 Hb_001856_110 0.2562126069 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]

Gene co-expression network

sample Hb_033594_050 Hb_033594_050 Hb_000349_160 Hb_000349_160 Hb_033594_050--Hb_000349_160 Hb_005016_110 Hb_005016_110 Hb_033594_050--Hb_005016_110 Hb_002585_060 Hb_002585_060 Hb_033594_050--Hb_002585_060 Hb_004063_010 Hb_004063_010 Hb_033594_050--Hb_004063_010 Hb_000028_270 Hb_000028_270 Hb_033594_050--Hb_000028_270 Hb_058095_030 Hb_058095_030 Hb_033594_050--Hb_058095_030 Hb_011242_070 Hb_011242_070 Hb_000349_160--Hb_011242_070 Hb_032299_070 Hb_032299_070 Hb_000349_160--Hb_032299_070 Hb_005765_020 Hb_005765_020 Hb_000349_160--Hb_005765_020 Hb_005618_110 Hb_005618_110 Hb_000349_160--Hb_005618_110 Hb_000349_160--Hb_002585_060 Hb_002729_020 Hb_002729_020 Hb_005016_110--Hb_002729_020 Hb_005016_110--Hb_002585_060 Hb_002815_040 Hb_002815_040 Hb_005016_110--Hb_002815_040 Hb_005016_110--Hb_058095_030 Hb_048476_070 Hb_048476_070 Hb_005016_110--Hb_048476_070 Hb_002585_060--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_002585_060--Hb_003727_060 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120 Hb_004063_010--Hb_003727_060 Hb_118046_010 Hb_118046_010 Hb_004063_010--Hb_118046_010 Hb_003442_120 Hb_003442_120 Hb_004063_010--Hb_003442_120 Hb_004063_010--Hb_058095_030 Hb_004063_010--Hb_000028_270 Hb_000028_270--Hb_058095_030 Hb_000028_270--Hb_118046_010 Hb_000028_270--Hb_003442_120 Hb_000028_270--Hb_005765_020 Hb_000028_270--Hb_002585_060 Hb_058095_030--Hb_005765_020 Hb_058095_030--Hb_118046_010 Hb_008642_050 Hb_008642_050 Hb_058095_030--Hb_008642_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.560612 0.0914682 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0552898 0 0.0796513 0.315311 0.619427

CAGE analysis