Hb_000349_160

Information

Type -
Description -
Location Contig349: 155995-179419
Sequence    

Annotation

kegg
ID cit:102621654
description geraniol 8-hydroxylase-like
nr
ID XP_006494538.1
description PREDICTED: geraniol 8-hydroxylase-like [Citrus sinensis]
swissprot
ID Q8VWZ7
description Geraniol 8-hydroxylase OS=Catharanthus roseus GN=CYP76B6 PE=1 SV=1
trembl
ID B9RBW9
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1682160 PE=3 SV=1
Gene Ontology
ID GO:0005506
description geraniol 8-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_160 0.0 - - PREDICTED: geraniol 8-hydroxylase-like [Citrus sinensis]
2 Hb_011242_070 0.1650680144 - - beta-cyanoalanine synthase [Hevea brasiliensis]
3 Hb_033594_050 0.1719881023 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
4 Hb_032299_070 0.1975036479 - - -
5 Hb_005765_020 0.2034288793 - - -
6 Hb_005618_110 0.205282053 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_002585_060 0.2060616121 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
8 Hb_058095_030 0.2188821881 - - -
9 Hb_000028_270 0.2270726608 - - -
10 Hb_004021_120 0.2320549348 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
11 Hb_000375_250 0.2323518743 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
12 Hb_148121_030 0.2353986402 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
13 Hb_000236_430 0.2373937632 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
14 Hb_004063_010 0.2382355647 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_048476_070 0.2399267145 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000959_370 0.243022995 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_006096_020 0.2466345755 - - Os06g0343500 [Oryza sativa Japonica Group]
18 Hb_000600_080 0.2474687052 - - -
19 Hb_005016_110 0.2476421312 - - -
20 Hb_028872_040 0.2480310269 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000349_160 Hb_000349_160 Hb_011242_070 Hb_011242_070 Hb_000349_160--Hb_011242_070 Hb_033594_050 Hb_033594_050 Hb_000349_160--Hb_033594_050 Hb_032299_070 Hb_032299_070 Hb_000349_160--Hb_032299_070 Hb_005765_020 Hb_005765_020 Hb_000349_160--Hb_005765_020 Hb_005618_110 Hb_005618_110 Hb_000349_160--Hb_005618_110 Hb_002585_060 Hb_002585_060 Hb_000349_160--Hb_002585_060 Hb_000600_080 Hb_000600_080 Hb_011242_070--Hb_000600_080 Hb_011242_070--Hb_002585_060 Hb_000959_370 Hb_000959_370 Hb_011242_070--Hb_000959_370 Hb_000236_430 Hb_000236_430 Hb_011242_070--Hb_000236_430 Hb_002815_040 Hb_002815_040 Hb_011242_070--Hb_002815_040 Hb_011242_070--Hb_032299_070 Hb_005016_110 Hb_005016_110 Hb_033594_050--Hb_005016_110 Hb_033594_050--Hb_002585_060 Hb_004063_010 Hb_004063_010 Hb_033594_050--Hb_004063_010 Hb_000028_270 Hb_000028_270 Hb_033594_050--Hb_000028_270 Hb_058095_030 Hb_058095_030 Hb_033594_050--Hb_058095_030 Hb_032299_070--Hb_000959_370 Hb_044313_010 Hb_044313_010 Hb_032299_070--Hb_044313_010 Hb_032299_070--Hb_005618_110 Hb_002142_010 Hb_002142_010 Hb_032299_070--Hb_002142_010 Hb_006013_030 Hb_006013_030 Hb_032299_070--Hb_006013_030 Hb_006992_030 Hb_006992_030 Hb_005765_020--Hb_006992_030 Hb_005765_020--Hb_058095_030 Hb_005765_020--Hb_000028_270 Hb_005765_020--Hb_002585_060 Hb_003927_020 Hb_003927_020 Hb_005765_020--Hb_003927_020 Hb_005765_020--Hb_032299_070 Hb_000254_150 Hb_000254_150 Hb_005618_110--Hb_000254_150 Hb_040963_010 Hb_040963_010 Hb_005618_110--Hb_040963_010 Hb_148121_030 Hb_148121_030 Hb_005618_110--Hb_148121_030 Hb_000149_120 Hb_000149_120 Hb_005618_110--Hb_000149_120 Hb_002740_170 Hb_002740_170 Hb_005618_110--Hb_002740_170 Hb_002585_060--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_002585_060--Hb_003727_060 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.324167 0.056786 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.023872 0.0281793 0.0180186 0.338695 0.381948

CAGE analysis