Hb_003727_060

Information

Type -
Description -
Location Contig3727: 82165-82600
Sequence    

Annotation

kegg
ID rcu:RCOM_0482610
description nucleic acid binding protein, putative
nr
ID XP_002527351.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q6GPH4
description XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1
trembl
ID B9SMY2
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0482610 PE=4 SV=1
Gene Ontology
ID GO:0005622
description traf-type zinc finger-related isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003727_060 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_004063_010 0.0370815822 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_118046_010 0.08430272 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
4 Hb_002585_060 0.0871442835 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
5 Hb_003442_120 0.088967761 - - hypothetical protein VITISV_019818 [Vitis vinifera]
6 Hb_003938_100 0.1301007816 - - conserved hypothetical protein [Ricinus communis]
7 Hb_038190_030 0.130989935 - - -
8 Hb_130579_050 0.1364906198 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
9 Hb_058095_030 0.1371429062 - - -
10 Hb_002025_240 0.1402119412 - - -
11 Hb_004021_120 0.1443843353 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_000028_270 0.1472733932 - - -
13 Hb_000236_430 0.1519118823 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
14 Hb_000243_050 0.1568204439 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_002056_140 0.1570554615 - - -
16 Hb_138667_010 0.157578817 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
17 Hb_007709_020 0.1616868563 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
18 Hb_028872_040 0.1667884709 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_027337_050 0.1674133012 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_000280_120 0.1765598354 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]

Gene co-expression network

sample Hb_003727_060 Hb_003727_060 Hb_004063_010 Hb_004063_010 Hb_003727_060--Hb_004063_010 Hb_118046_010 Hb_118046_010 Hb_003727_060--Hb_118046_010 Hb_002585_060 Hb_002585_060 Hb_003727_060--Hb_002585_060 Hb_003442_120 Hb_003442_120 Hb_003727_060--Hb_003442_120 Hb_003938_100 Hb_003938_100 Hb_003727_060--Hb_003938_100 Hb_038190_030 Hb_038190_030 Hb_003727_060--Hb_038190_030 Hb_004063_010--Hb_118046_010 Hb_004063_010--Hb_003442_120 Hb_004063_010--Hb_002585_060 Hb_058095_030 Hb_058095_030 Hb_004063_010--Hb_058095_030 Hb_000028_270 Hb_000028_270 Hb_004063_010--Hb_000028_270 Hb_118046_010--Hb_003442_120 Hb_130579_050 Hb_130579_050 Hb_118046_010--Hb_130579_050 Hb_002025_240 Hb_002025_240 Hb_118046_010--Hb_002025_240 Hb_118046_010--Hb_000028_270 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120 Hb_003442_120--Hb_002025_240 Hb_003442_120--Hb_130579_050 Hb_003442_120--Hb_000028_270 Hb_003938_100--Hb_000243_050 Hb_003938_100--Hb_138667_010 Hb_003938_100--Hb_038190_030 Hb_001301_070 Hb_001301_070 Hb_003938_100--Hb_001301_070 Hb_003938_100--Hb_000280_120 Hb_002056_140 Hb_002056_140 Hb_003938_100--Hb_002056_140 Hb_005081_090 Hb_005081_090 Hb_038190_030--Hb_005081_090 Hb_038190_030--Hb_002056_140 Hb_007709_020 Hb_007709_020 Hb_038190_030--Hb_007709_020 Hb_038190_030--Hb_138667_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.927927 0.0626475 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.316896 0.790903

CAGE analysis