Hb_004063_010

Information

Type -
Description -
Location Contig4063: 7725-23410
Sequence    

Annotation

kegg
ID rcu:RCOM_1080970
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002514954.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMI5
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1080970 PE=4 SV=1
Gene Ontology
ID GO:0005515
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40305: 22699-22927 , PASA_asmbl_40306: 23043-23525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004063_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_003727_060 0.0370815822 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_118046_010 0.0612547812 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
4 Hb_003442_120 0.0756096438 - - hypothetical protein VITISV_019818 [Vitis vinifera]
5 Hb_002585_060 0.0774456276 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
6 Hb_058095_030 0.106708608 - - -
7 Hb_000028_270 0.1112466865 - - -
8 Hb_130579_050 0.1229501593 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
9 Hb_002025_240 0.1340596358 - - -
10 Hb_003938_100 0.147497259 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004021_120 0.1496963506 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_000236_430 0.1521848561 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
13 Hb_038190_030 0.1619477496 - - -
14 Hb_000243_050 0.1644757416 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_138667_010 0.1681829997 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_027337_050 0.1731097983 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_002056_140 0.1740235213 - - -
18 Hb_002815_040 0.175179347 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
19 Hb_001301_070 0.1795010203 - - -
20 Hb_028872_040 0.1810781409 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_004063_010 Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_004063_010--Hb_003727_060 Hb_118046_010 Hb_118046_010 Hb_004063_010--Hb_118046_010 Hb_003442_120 Hb_003442_120 Hb_004063_010--Hb_003442_120 Hb_002585_060 Hb_002585_060 Hb_004063_010--Hb_002585_060 Hb_058095_030 Hb_058095_030 Hb_004063_010--Hb_058095_030 Hb_000028_270 Hb_000028_270 Hb_004063_010--Hb_000028_270 Hb_003727_060--Hb_118046_010 Hb_003727_060--Hb_002585_060 Hb_003727_060--Hb_003442_120 Hb_003938_100 Hb_003938_100 Hb_003727_060--Hb_003938_100 Hb_038190_030 Hb_038190_030 Hb_003727_060--Hb_038190_030 Hb_118046_010--Hb_003442_120 Hb_130579_050 Hb_130579_050 Hb_118046_010--Hb_130579_050 Hb_002025_240 Hb_002025_240 Hb_118046_010--Hb_002025_240 Hb_118046_010--Hb_000028_270 Hb_003442_120--Hb_002025_240 Hb_003442_120--Hb_130579_050 Hb_003442_120--Hb_000028_270 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120 Hb_058095_030--Hb_000028_270 Hb_005765_020 Hb_005765_020 Hb_058095_030--Hb_005765_020 Hb_058095_030--Hb_118046_010 Hb_008642_050 Hb_008642_050 Hb_058095_030--Hb_008642_050 Hb_000028_270--Hb_005765_020 Hb_000028_270--Hb_002585_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.157798 0.0162563 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0594371 0.152021

CAGE analysis