Hb_002056_140

Information

Type -
Description -
Location Contig2056: 163485-172445
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002056_140 0.0 - - -
2 Hb_004191_030 0.0756887389 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
3 Hb_005852_010 0.079439082 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_003938_100 0.0999869197 - - conserved hypothetical protein [Ricinus communis]
5 Hb_151411_010 0.103179729 - - -
6 Hb_000192_060 0.1060652487 - - -
7 Hb_038190_030 0.1122303171 - - -
8 Hb_001301_070 0.1145658909 - - -
9 Hb_000209_010 0.1199301106 - - -
10 Hb_000916_010 0.1448571343 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
11 Hb_039547_010 0.1454480187 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
12 Hb_000243_050 0.1460026192 - - ADP-ribosylation factor, putative [Ricinus communis]
13 Hb_003727_060 0.1570554615 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_009898_060 0.1615441038 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
15 Hb_138667_010 0.169990694 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_000269_040 0.1739985664 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_004063_010 0.1740235213 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_094694_010 0.175725459 - - -
19 Hb_027337_050 0.1761067243 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_001899_040 0.1774533712 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002056_140 Hb_002056_140 Hb_004191_030 Hb_004191_030 Hb_002056_140--Hb_004191_030 Hb_005852_010 Hb_005852_010 Hb_002056_140--Hb_005852_010 Hb_003938_100 Hb_003938_100 Hb_002056_140--Hb_003938_100 Hb_151411_010 Hb_151411_010 Hb_002056_140--Hb_151411_010 Hb_000192_060 Hb_000192_060 Hb_002056_140--Hb_000192_060 Hb_038190_030 Hb_038190_030 Hb_002056_140--Hb_038190_030 Hb_004191_030--Hb_005852_010 Hb_000300_240 Hb_000300_240 Hb_004191_030--Hb_000300_240 Hb_004191_030--Hb_151411_010 Hb_071998_010 Hb_071998_010 Hb_004191_030--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_004191_030--Hb_034909_010 Hb_005852_010--Hb_151411_010 Hb_000209_010 Hb_000209_010 Hb_005852_010--Hb_000209_010 Hb_005852_010--Hb_000192_060 Hb_000269_040 Hb_000269_040 Hb_005852_010--Hb_000269_040 Hb_000243_050 Hb_000243_050 Hb_003938_100--Hb_000243_050 Hb_138667_010 Hb_138667_010 Hb_003938_100--Hb_138667_010 Hb_003938_100--Hb_038190_030 Hb_001301_070 Hb_001301_070 Hb_003938_100--Hb_001301_070 Hb_000280_120 Hb_000280_120 Hb_003938_100--Hb_000280_120 Hb_151411_010--Hb_000209_010 Hb_151411_010--Hb_000192_060 Hb_000916_010 Hb_000916_010 Hb_151411_010--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_151411_010--Hb_039547_010 Hb_151411_010--Hb_001301_070 Hb_094694_010 Hb_094694_010 Hb_151411_010--Hb_094694_010 Hb_000192_060--Hb_001301_070 Hb_000192_060--Hb_000209_010 Hb_000192_060--Hb_000916_010 Hb_000192_060--Hb_039547_010 Hb_179183_010 Hb_179183_010 Hb_000192_060--Hb_179183_010 Hb_005081_090 Hb_005081_090 Hb_038190_030--Hb_005081_090 Hb_007709_020 Hb_007709_020 Hb_038190_030--Hb_007709_020 Hb_003727_060 Hb_003727_060 Hb_038190_030--Hb_003727_060 Hb_038190_030--Hb_138667_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0383379 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00787012 0.0416409

CAGE analysis