Hb_004191_030

Information

Type -
Description -
Location Contig4191: 65808-66544
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13140g
description hypothetical protein
nr
ID XP_006376448.1
description hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
swissprot
ID Q9M2E2
description (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1
trembl
ID U5FT87
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13140g PE=3 SV=1
Gene Ontology
ID GO:0050221
description (+)-neomenthol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004191_030 0.0 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
2 Hb_005852_010 0.0492500841 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_002056_140 0.0756887389 - - -
4 Hb_000300_240 0.1471557682 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
5 Hb_151411_010 0.1496464122 - - -
6 Hb_071998_010 0.1522084357 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
7 Hb_034909_010 0.1525492635 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_003410_020 0.152561254 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_011888_010 0.1525696294 - - Receptor like protein 46, putative [Theobroma cacao]
10 Hb_004566_050 0.1561261935 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_111985_030 0.1562234324 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_144813_010 0.1592237606 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
13 Hb_000192_060 0.1603520577 - - -
14 Hb_001318_060 0.1609289144 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
15 Hb_003582_050 0.1636463922 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
16 Hb_010435_010 0.1639687078 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000209_010 0.1641662831 - - -
18 Hb_002836_030 0.1650831004 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
19 Hb_038190_030 0.1671000268 - - -
20 Hb_000269_040 0.170513962 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004191_030 Hb_004191_030 Hb_005852_010 Hb_005852_010 Hb_004191_030--Hb_005852_010 Hb_002056_140 Hb_002056_140 Hb_004191_030--Hb_002056_140 Hb_000300_240 Hb_000300_240 Hb_004191_030--Hb_000300_240 Hb_151411_010 Hb_151411_010 Hb_004191_030--Hb_151411_010 Hb_071998_010 Hb_071998_010 Hb_004191_030--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_004191_030--Hb_034909_010 Hb_005852_010--Hb_002056_140 Hb_005852_010--Hb_151411_010 Hb_000209_010 Hb_000209_010 Hb_005852_010--Hb_000209_010 Hb_000192_060 Hb_000192_060 Hb_005852_010--Hb_000192_060 Hb_000269_040 Hb_000269_040 Hb_005852_010--Hb_000269_040 Hb_003938_100 Hb_003938_100 Hb_002056_140--Hb_003938_100 Hb_002056_140--Hb_151411_010 Hb_002056_140--Hb_000192_060 Hb_038190_030 Hb_038190_030 Hb_002056_140--Hb_038190_030 Hb_000002_280 Hb_000002_280 Hb_000300_240--Hb_000002_280 Hb_166828_010 Hb_166828_010 Hb_000300_240--Hb_166828_010 Hb_002092_140 Hb_002092_140 Hb_000300_240--Hb_002092_140 Hb_000320_170 Hb_000320_170 Hb_000300_240--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_000300_240--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_000300_240--Hb_003582_050 Hb_151411_010--Hb_000209_010 Hb_151411_010--Hb_000192_060 Hb_000916_010 Hb_000916_010 Hb_151411_010--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_151411_010--Hb_039547_010 Hb_001301_070 Hb_001301_070 Hb_151411_010--Hb_001301_070 Hb_094694_010 Hb_094694_010 Hb_151411_010--Hb_094694_010 Hb_011888_010 Hb_011888_010 Hb_071998_010--Hb_011888_010 Hb_071998_010--Hb_034909_010 Hb_003410_020 Hb_003410_020 Hb_071998_010--Hb_003410_020 Hb_144813_010 Hb_144813_010 Hb_071998_010--Hb_144813_010 Hb_004566_050 Hb_004566_050 Hb_071998_010--Hb_004566_050 Hb_071998_010--Hb_003582_050 Hb_034909_010--Hb_003410_020 Hb_034909_010--Hb_004566_050 Hb_111985_030 Hb_111985_030 Hb_034909_010--Hb_111985_030 Hb_034909_010--Hb_011888_010 Hb_001318_060 Hb_001318_060 Hb_034909_010--Hb_001318_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03877 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10238 1.11955

CAGE analysis