Hb_005852_010

Information

Type -
Description -
Location Contig5852: 22086-25797
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005852_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_004191_030 0.0492500841 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
3 Hb_002056_140 0.079439082 - - -
4 Hb_151411_010 0.1140883166 - - -
5 Hb_000209_010 0.1263162384 - - -
6 Hb_000192_060 0.1287906351 - - -
7 Hb_000269_040 0.140101241 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000916_010 0.1418000355 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
9 Hb_039547_010 0.1419432677 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
10 Hb_001301_070 0.1480621315 - - -
11 Hb_094694_010 0.1498018839 - - -
12 Hb_000248_020 0.1572179798 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
13 Hb_001318_060 0.1609447116 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
14 Hb_111985_030 0.1612731448 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_004566_050 0.1613027265 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_010435_010 0.1614338621 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_007575_020 0.162697868 - - cytochrome P450, putative [Ricinus communis]
18 Hb_003410_020 0.1641558279 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_034909_010 0.1641788079 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003938_100 0.1708060863 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005852_010 Hb_005852_010 Hb_004191_030 Hb_004191_030 Hb_005852_010--Hb_004191_030 Hb_002056_140 Hb_002056_140 Hb_005852_010--Hb_002056_140 Hb_151411_010 Hb_151411_010 Hb_005852_010--Hb_151411_010 Hb_000209_010 Hb_000209_010 Hb_005852_010--Hb_000209_010 Hb_000192_060 Hb_000192_060 Hb_005852_010--Hb_000192_060 Hb_000269_040 Hb_000269_040 Hb_005852_010--Hb_000269_040 Hb_004191_030--Hb_002056_140 Hb_000300_240 Hb_000300_240 Hb_004191_030--Hb_000300_240 Hb_004191_030--Hb_151411_010 Hb_071998_010 Hb_071998_010 Hb_004191_030--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_004191_030--Hb_034909_010 Hb_003938_100 Hb_003938_100 Hb_002056_140--Hb_003938_100 Hb_002056_140--Hb_151411_010 Hb_002056_140--Hb_000192_060 Hb_038190_030 Hb_038190_030 Hb_002056_140--Hb_038190_030 Hb_151411_010--Hb_000209_010 Hb_151411_010--Hb_000192_060 Hb_000916_010 Hb_000916_010 Hb_151411_010--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_151411_010--Hb_039547_010 Hb_001301_070 Hb_001301_070 Hb_151411_010--Hb_001301_070 Hb_094694_010 Hb_094694_010 Hb_151411_010--Hb_094694_010 Hb_000209_010--Hb_000192_060 Hb_000209_010--Hb_000916_010 Hb_000209_010--Hb_039547_010 Hb_000209_010--Hb_001301_070 Hb_000209_010--Hb_094694_010 Hb_000192_060--Hb_001301_070 Hb_000192_060--Hb_000916_010 Hb_000192_060--Hb_039547_010 Hb_179183_010 Hb_179183_010 Hb_000192_060--Hb_179183_010 Hb_007575_020 Hb_007575_020 Hb_000269_040--Hb_007575_020 Hb_000269_040--Hb_094694_010 Hb_001174_050 Hb_001174_050 Hb_000269_040--Hb_001174_050 Hb_000248_020 Hb_000248_020 Hb_000269_040--Hb_000248_020 Hb_000269_040--Hb_151411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0342766 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00433052 0.0466368

CAGE analysis