Hb_002815_040

Information

Type -
Description -
Location Contig2815: 99354-101028
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_009614563.1
description PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29467: 85035-131762 , PASA_asmbl_29472: 101511-101956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002815_040 0.0 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
2 Hb_000061_110 0.1498375001 - - -
3 Hb_048476_070 0.1544192536 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002585_060 0.1548525982 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
5 Hb_011242_070 0.1551487568 - - beta-cyanoalanine synthase [Hevea brasiliensis]
6 Hb_000236_430 0.1655407338 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
7 Hb_000600_080 0.1660273928 - - -
8 Hb_001411_100 0.1686407218 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
9 Hb_000243_050 0.1695398408 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_058095_030 0.1712295854 - - -
11 Hb_003649_030 0.1713047917 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
12 Hb_000417_150 0.171316685 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
13 Hb_001452_090 0.1733995133 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
14 Hb_004063_010 0.175179347 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000280_120 0.1772393854 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
16 Hb_003938_100 0.1773657281 - - conserved hypothetical protein [Ricinus communis]
17 Hb_138667_010 0.1774062096 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
18 Hb_072173_010 0.1774951662 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
19 Hb_000101_320 0.177787928 - - -
20 Hb_003727_060 0.1778844365 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002815_040 Hb_002815_040 Hb_000061_110 Hb_000061_110 Hb_002815_040--Hb_000061_110 Hb_048476_070 Hb_048476_070 Hb_002815_040--Hb_048476_070 Hb_002585_060 Hb_002585_060 Hb_002815_040--Hb_002585_060 Hb_011242_070 Hb_011242_070 Hb_002815_040--Hb_011242_070 Hb_000236_430 Hb_000236_430 Hb_002815_040--Hb_000236_430 Hb_000600_080 Hb_000600_080 Hb_002815_040--Hb_000600_080 Hb_003649_030 Hb_003649_030 Hb_000061_110--Hb_003649_030 Hb_009898_060 Hb_009898_060 Hb_000061_110--Hb_009898_060 Hb_001411_100 Hb_001411_100 Hb_000061_110--Hb_001411_100 Hb_001355_060 Hb_001355_060 Hb_000061_110--Hb_001355_060 Hb_056506_010 Hb_056506_010 Hb_000061_110--Hb_056506_010 Hb_005470_040 Hb_005470_040 Hb_048476_070--Hb_005470_040 Hb_031949_010 Hb_031949_010 Hb_048476_070--Hb_031949_010 Hb_000417_150 Hb_000417_150 Hb_048476_070--Hb_000417_150 Hb_026053_030 Hb_026053_030 Hb_048476_070--Hb_026053_030 Hb_067345_020 Hb_067345_020 Hb_048476_070--Hb_067345_020 Hb_004063_010 Hb_004063_010 Hb_002585_060--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_002585_060--Hb_003727_060 Hb_058095_030 Hb_058095_030 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120 Hb_011242_070--Hb_000600_080 Hb_011242_070--Hb_002585_060 Hb_000959_370 Hb_000959_370 Hb_011242_070--Hb_000959_370 Hb_011242_070--Hb_000236_430 Hb_032299_070 Hb_032299_070 Hb_011242_070--Hb_032299_070 Hb_000236_430--Hb_026053_030 Hb_000236_430--Hb_000417_150 Hb_172426_010 Hb_172426_010 Hb_000236_430--Hb_172426_010 Hb_008195_020 Hb_008195_020 Hb_000236_430--Hb_008195_020 Hb_000236_430--Hb_003727_060 Hb_000236_430--Hb_004063_010 Hb_000685_140 Hb_000685_140 Hb_000600_080--Hb_000685_140 Hb_072173_010 Hb_072173_010 Hb_000600_080--Hb_072173_010 Hb_000600_080--Hb_001411_100 Hb_000101_320 Hb_000101_320 Hb_000600_080--Hb_000101_320 Hb_000600_080--Hb_031949_010 Hb_000600_080--Hb_000959_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.9377 0.133986 0.18507 0.0364134 0.0854506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0647394 1.65416 3.9598

CAGE analysis