Hb_000061_110

Information

Type -
Description -
Location Contig61: 100350-108018
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50905: 99651-99866 , PASA_asmbl_50907: 101207-101321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_110 0.0 - - -
2 Hb_003649_030 0.0563701642 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
3 Hb_009898_060 0.1339322635 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
4 Hb_002815_040 0.1498375001 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
5 Hb_001411_100 0.1505557019 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
6 Hb_001355_060 0.1522405522 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
7 Hb_056506_010 0.1603570444 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
8 Hb_000243_050 0.1615236574 - - ADP-ribosylation factor, putative [Ricinus communis]
9 Hb_003938_100 0.1640813779 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000417_150 0.1644282028 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
11 Hb_001301_070 0.1650516009 - - -
12 Hb_000600_080 0.16988185 - - -
13 Hb_000685_140 0.1701465269 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
14 Hb_000192_060 0.1720560453 - - -
15 Hb_138667_010 0.1729289128 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_000280_120 0.1744704606 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
17 Hb_000269_040 0.1752253901 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_168909_010 0.1753482047 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
19 Hb_000866_390 0.1778136124 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
20 Hb_151411_010 0.1801882436 - - -

Gene co-expression network

sample Hb_000061_110 Hb_000061_110 Hb_003649_030 Hb_003649_030 Hb_000061_110--Hb_003649_030 Hb_009898_060 Hb_009898_060 Hb_000061_110--Hb_009898_060 Hb_002815_040 Hb_002815_040 Hb_000061_110--Hb_002815_040 Hb_001411_100 Hb_001411_100 Hb_000061_110--Hb_001411_100 Hb_001355_060 Hb_001355_060 Hb_000061_110--Hb_001355_060 Hb_056506_010 Hb_056506_010 Hb_000061_110--Hb_056506_010 Hb_003649_030--Hb_056506_010 Hb_000866_390 Hb_000866_390 Hb_003649_030--Hb_000866_390 Hb_003649_030--Hb_009898_060 Hb_001008_020 Hb_001008_020 Hb_003649_030--Hb_001008_020 Hb_003649_030--Hb_001411_100 Hb_009898_060--Hb_056506_010 Hb_001899_040 Hb_001899_040 Hb_009898_060--Hb_001899_040 Hb_002056_140 Hb_002056_140 Hb_009898_060--Hb_002056_140 Hb_000269_040 Hb_000269_040 Hb_009898_060--Hb_000269_040 Hb_048476_070 Hb_048476_070 Hb_002815_040--Hb_048476_070 Hb_002585_060 Hb_002585_060 Hb_002815_040--Hb_002585_060 Hb_011242_070 Hb_011242_070 Hb_002815_040--Hb_011242_070 Hb_000236_430 Hb_000236_430 Hb_002815_040--Hb_000236_430 Hb_000600_080 Hb_000600_080 Hb_002815_040--Hb_000600_080 Hb_000685_140 Hb_000685_140 Hb_001411_100--Hb_000685_140 Hb_001411_100--Hb_000600_080 Hb_000101_320 Hb_000101_320 Hb_001411_100--Hb_000101_320 Hb_028872_100 Hb_028872_100 Hb_001411_100--Hb_028872_100 Hb_001452_090 Hb_001452_090 Hb_001411_100--Hb_001452_090 Hb_000417_150 Hb_000417_150 Hb_001411_100--Hb_000417_150 Hb_001174_050 Hb_001174_050 Hb_001355_060--Hb_001174_050 Hb_002973_130 Hb_002973_130 Hb_001355_060--Hb_002973_130 Hb_011358_010 Hb_011358_010 Hb_001355_060--Hb_011358_010 Hb_112791_030 Hb_112791_030 Hb_001355_060--Hb_112791_030 Hb_145080_010 Hb_145080_010 Hb_001355_060--Hb_145080_010 Hb_056506_010--Hb_001008_020 Hb_007137_020 Hb_007137_020 Hb_056506_010--Hb_007137_020 Hb_000044_050 Hb_000044_050 Hb_056506_010--Hb_000044_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.460008 0 0.0666862 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.226411 0.613421

CAGE analysis