Hb_009898_060

Information

Type -
Description -
Location Contig9898: 37052-39143
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09865g
description hypothetical protein
nr
ID XP_006380619.1
description hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G7Z8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s09865g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009898_060 0.0 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
2 Hb_056506_010 0.1200727109 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
3 Hb_000061_110 0.1339322635 - - -
4 Hb_003649_030 0.1420764048 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
5 Hb_001899_040 0.14706374 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
6 Hb_002056_140 0.1615441038 - - -
7 Hb_000269_040 0.1640560134 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_004191_030 0.175110408 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
9 Hb_001008_020 0.1756911932 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_172426_010 0.1771310134 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
11 Hb_038190_030 0.1804403389 - - -
12 Hb_027337_050 0.1849976721 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_005852_010 0.1868555814 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_007137_020 0.1878508889 - - multicopper oxidase, putative [Ricinus communis]
15 Hb_003938_100 0.1911458401 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008195_020 0.1929366301 - - Vacuolar-processing enzyme precursor [Ricinus communis]
17 Hb_000044_050 0.193482577 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
18 Hb_000417_150 0.1936584065 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
19 Hb_007575_020 0.1966773428 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000392_510 0.2022132382 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]

Gene co-expression network

sample Hb_009898_060 Hb_009898_060 Hb_056506_010 Hb_056506_010 Hb_009898_060--Hb_056506_010 Hb_000061_110 Hb_000061_110 Hb_009898_060--Hb_000061_110 Hb_003649_030 Hb_003649_030 Hb_009898_060--Hb_003649_030 Hb_001899_040 Hb_001899_040 Hb_009898_060--Hb_001899_040 Hb_002056_140 Hb_002056_140 Hb_009898_060--Hb_002056_140 Hb_000269_040 Hb_000269_040 Hb_009898_060--Hb_000269_040 Hb_001008_020 Hb_001008_020 Hb_056506_010--Hb_001008_020 Hb_007137_020 Hb_007137_020 Hb_056506_010--Hb_007137_020 Hb_056506_010--Hb_003649_030 Hb_056506_010--Hb_000061_110 Hb_000044_050 Hb_000044_050 Hb_056506_010--Hb_000044_050 Hb_000061_110--Hb_003649_030 Hb_002815_040 Hb_002815_040 Hb_000061_110--Hb_002815_040 Hb_001411_100 Hb_001411_100 Hb_000061_110--Hb_001411_100 Hb_001355_060 Hb_001355_060 Hb_000061_110--Hb_001355_060 Hb_000866_390 Hb_000866_390 Hb_003649_030--Hb_000866_390 Hb_003649_030--Hb_001008_020 Hb_003649_030--Hb_001411_100 Hb_002571_050 Hb_002571_050 Hb_001899_040--Hb_002571_050 Hb_027337_050 Hb_027337_050 Hb_001899_040--Hb_027337_050 Hb_000300_240 Hb_000300_240 Hb_001899_040--Hb_000300_240 Hb_038190_030 Hb_038190_030 Hb_001899_040--Hb_038190_030 Hb_000002_280 Hb_000002_280 Hb_001899_040--Hb_000002_280 Hb_004191_030 Hb_004191_030 Hb_002056_140--Hb_004191_030 Hb_005852_010 Hb_005852_010 Hb_002056_140--Hb_005852_010 Hb_003938_100 Hb_003938_100 Hb_002056_140--Hb_003938_100 Hb_151411_010 Hb_151411_010 Hb_002056_140--Hb_151411_010 Hb_000192_060 Hb_000192_060 Hb_002056_140--Hb_000192_060 Hb_002056_140--Hb_038190_030 Hb_007575_020 Hb_007575_020 Hb_000269_040--Hb_007575_020 Hb_000269_040--Hb_005852_010 Hb_094694_010 Hb_094694_010 Hb_000269_040--Hb_094694_010 Hb_001174_050 Hb_001174_050 Hb_000269_040--Hb_001174_050 Hb_000248_020 Hb_000248_020 Hb_000269_040--Hb_000248_020 Hb_000269_040--Hb_151411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.183982 0 0.0194441 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.032594 0.165598

CAGE analysis