Hb_048476_070

Information

Type -
Description -
Location Contig48476: 41319-47252
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44943: 46879-47263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005470_040 0.1170546866 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
3 Hb_031949_010 0.1370591603 - - -
4 Hb_002815_040 0.1544192536 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
5 Hb_000417_150 0.154976513 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
6 Hb_026053_030 0.1577746634 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
7 Hb_067345_020 0.1589350128 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
8 Hb_000236_430 0.161081589 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
9 Hb_001856_110 0.1613742832 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
10 Hb_109489_010 0.1673368818 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
11 Hb_000059_080 0.1691578854 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
12 Hb_000377_160 0.1693057134 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
13 Hb_001357_360 0.1763543347 - - zinc finger protein, putative [Ricinus communis]
14 Hb_004007_230 0.1773722638 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
15 Hb_000264_340 0.1777040239 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
16 Hb_000009_390 0.1789142039 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
17 Hb_001452_090 0.1796055221 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
18 Hb_007320_020 0.1799748541 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
19 Hb_042463_060 0.1810513908 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002110_110 0.1812496969 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_048476_070 Hb_048476_070 Hb_005470_040 Hb_005470_040 Hb_048476_070--Hb_005470_040 Hb_031949_010 Hb_031949_010 Hb_048476_070--Hb_031949_010 Hb_002815_040 Hb_002815_040 Hb_048476_070--Hb_002815_040 Hb_000417_150 Hb_000417_150 Hb_048476_070--Hb_000417_150 Hb_026053_030 Hb_026053_030 Hb_048476_070--Hb_026053_030 Hb_067345_020 Hb_067345_020 Hb_048476_070--Hb_067345_020 Hb_005470_040--Hb_031949_010 Hb_000264_340 Hb_000264_340 Hb_005470_040--Hb_000264_340 Hb_001357_360 Hb_001357_360 Hb_005470_040--Hb_001357_360 Hb_000377_160 Hb_000377_160 Hb_005470_040--Hb_000377_160 Hb_109489_010 Hb_109489_010 Hb_005470_040--Hb_109489_010 Hb_123560_050 Hb_123560_050 Hb_005470_040--Hb_123560_050 Hb_031949_010--Hb_000377_160 Hb_001856_110 Hb_001856_110 Hb_031949_010--Hb_001856_110 Hb_000009_390 Hb_000009_390 Hb_031949_010--Hb_000009_390 Hb_031949_010--Hb_026053_030 Hb_031949_010--Hb_000417_150 Hb_000061_110 Hb_000061_110 Hb_002815_040--Hb_000061_110 Hb_002585_060 Hb_002585_060 Hb_002815_040--Hb_002585_060 Hb_011242_070 Hb_011242_070 Hb_002815_040--Hb_011242_070 Hb_000236_430 Hb_000236_430 Hb_002815_040--Hb_000236_430 Hb_000600_080 Hb_000600_080 Hb_002815_040--Hb_000600_080 Hb_000417_150--Hb_026053_030 Hb_028872_100 Hb_028872_100 Hb_000417_150--Hb_028872_100 Hb_004007_230 Hb_004007_230 Hb_000417_150--Hb_004007_230 Hb_000044_050 Hb_000044_050 Hb_000417_150--Hb_000044_050 Hb_001411_100 Hb_001411_100 Hb_000417_150--Hb_001411_100 Hb_026053_030--Hb_000044_050 Hb_026053_030--Hb_004007_230 Hb_011344_140 Hb_011344_140 Hb_026053_030--Hb_011344_140 Hb_001907_020 Hb_001907_020 Hb_026053_030--Hb_001907_020 Hb_067345_020--Hb_000417_150 Hb_067345_020--Hb_028872_100 Hb_067345_020--Hb_026053_030 Hb_067345_020--Hb_005470_040 Hb_000685_140 Hb_000685_140 Hb_067345_020--Hb_000685_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0172032 1.04629 0.197573 0.134616 0.0172458 0.0151138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0575559 0.668035 1.08866

CAGE analysis