Hb_011242_070

Information

Type -
Description -
Location Contig11242: 72206-75599
Sequence    

Annotation

kegg
ID tcc:TCM_005308
description Cysteine synthase C1
nr
ID AAP41851.1
description beta-cyanoalanine synthase [Hevea brasiliensis]
swissprot
ID Q1KLZ2
description L-3-cyanoalanine synthase 1, mitochondrial OS=Malus domestica GN=CAS1 PE=1 SV=1
trembl
ID Q5VLJ4
description Cysteine synthase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0009507
description bifunctional l-3-cyanoalanine synthase cysteine synthase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011242_070 0.0 - - beta-cyanoalanine synthase [Hevea brasiliensis]
2 Hb_000600_080 0.1404635364 - - -
3 Hb_002585_060 0.1477891544 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
4 Hb_000959_370 0.1486994284 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
5 Hb_000236_430 0.1536364771 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
6 Hb_002815_040 0.1551487568 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
7 Hb_032299_070 0.1564635494 - - -
8 Hb_001411_100 0.1611972959 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
9 Hb_000059_080 0.1615170935 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
10 Hb_000349_160 0.1650680144 - - PREDICTED: geraniol 8-hydroxylase-like [Citrus sinensis]
11 Hb_028872_040 0.166036548 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000280_120 0.1688909208 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
13 Hb_138667_010 0.1694708317 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
14 Hb_002142_010 0.1778890077 - - conserved hypothetical protein [Ricinus communis]
15 Hb_072173_010 0.1796165499 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
16 Hb_010813_030 0.180223836 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
17 Hb_007709_020 0.1805816861 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
18 Hb_031949_010 0.1810550223 - - -
19 Hb_000243_050 0.183348358 - - ADP-ribosylation factor, putative [Ricinus communis]
20 Hb_048476_070 0.1843986662 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011242_070 Hb_011242_070 Hb_000600_080 Hb_000600_080 Hb_011242_070--Hb_000600_080 Hb_002585_060 Hb_002585_060 Hb_011242_070--Hb_002585_060 Hb_000959_370 Hb_000959_370 Hb_011242_070--Hb_000959_370 Hb_000236_430 Hb_000236_430 Hb_011242_070--Hb_000236_430 Hb_002815_040 Hb_002815_040 Hb_011242_070--Hb_002815_040 Hb_032299_070 Hb_032299_070 Hb_011242_070--Hb_032299_070 Hb_000685_140 Hb_000685_140 Hb_000600_080--Hb_000685_140 Hb_072173_010 Hb_072173_010 Hb_000600_080--Hb_072173_010 Hb_001411_100 Hb_001411_100 Hb_000600_080--Hb_001411_100 Hb_000101_320 Hb_000101_320 Hb_000600_080--Hb_000101_320 Hb_031949_010 Hb_031949_010 Hb_000600_080--Hb_031949_010 Hb_000600_080--Hb_000959_370 Hb_004063_010 Hb_004063_010 Hb_002585_060--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_002585_060--Hb_003727_060 Hb_058095_030 Hb_058095_030 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120 Hb_006013_030 Hb_006013_030 Hb_000959_370--Hb_006013_030 Hb_000959_370--Hb_032299_070 Hb_002733_050 Hb_002733_050 Hb_000959_370--Hb_002733_050 Hb_000959_370--Hb_000280_120 Hb_000959_370--Hb_072173_010 Hb_026053_030 Hb_026053_030 Hb_000236_430--Hb_026053_030 Hb_000417_150 Hb_000417_150 Hb_000236_430--Hb_000417_150 Hb_172426_010 Hb_172426_010 Hb_000236_430--Hb_172426_010 Hb_008195_020 Hb_008195_020 Hb_000236_430--Hb_008195_020 Hb_000236_430--Hb_003727_060 Hb_000236_430--Hb_004063_010 Hb_000061_110 Hb_000061_110 Hb_002815_040--Hb_000061_110 Hb_048476_070 Hb_048476_070 Hb_002815_040--Hb_048476_070 Hb_002815_040--Hb_002585_060 Hb_002815_040--Hb_000236_430 Hb_002815_040--Hb_000600_080 Hb_044313_010 Hb_044313_010 Hb_032299_070--Hb_044313_010 Hb_005618_110 Hb_005618_110 Hb_032299_070--Hb_005618_110 Hb_002142_010 Hb_002142_010 Hb_032299_070--Hb_002142_010 Hb_032299_070--Hb_006013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178591 61.5492 3.50138 2.95034 0.136893 0.11614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.735195 1.73517 0.28326 54.551 68.0714

CAGE analysis