Hb_002729_020

Information

Type -
Description -
Location Contig2729: 19309-27082
Sequence    

Annotation

kegg
ID brp:103868780
description uncharacterized LOC103868780
nr
ID XP_010527658.1
description PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q5NRP4
description Putative gag-pol polyprotein, identical OS=Solanum demissum GN=SDM1_58t00004 PE=4 SV=1
Gene Ontology
ID GO:0046872
description gag-pol identical

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002729_020 0.0 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
2 Hb_005016_110 0.122894437 - - -
3 Hb_000832_010 0.1756697997 - - hypothetical protein VITISV_005044 [Vitis vinifera]
4 Hb_001871_030 0.1926224173 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000136_080 0.2174905468 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]
6 Hb_002815_040 0.2201227974 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
7 Hb_114121_010 0.2252936927 - - -
8 Hb_002733_050 0.2265193158 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_005765_020 0.2290872616 - - -
10 Hb_058095_030 0.2295085517 - - -
11 Hb_072173_010 0.2300540663 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
12 Hb_006274_020 0.2309185294 - - structural constituent of cell wall, putative [Ricinus communis]
13 Hb_168909_010 0.2316092717 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
14 Hb_006013_030 0.236926829 - - -
15 Hb_008755_020 0.238287731 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_179183_010 0.241820782 - - RALF-LIKE 32 family protein [Populus trichocarpa]
17 Hb_002585_060 0.242755285 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
18 Hb_033594_050 0.2432243102 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
19 Hb_102602_020 0.2451619035 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
20 Hb_000280_120 0.2468038212 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]

Gene co-expression network

sample Hb_002729_020 Hb_002729_020 Hb_005016_110 Hb_005016_110 Hb_002729_020--Hb_005016_110 Hb_000832_010 Hb_000832_010 Hb_002729_020--Hb_000832_010 Hb_001871_030 Hb_001871_030 Hb_002729_020--Hb_001871_030 Hb_000136_080 Hb_000136_080 Hb_002729_020--Hb_000136_080 Hb_002815_040 Hb_002815_040 Hb_002729_020--Hb_002815_040 Hb_114121_010 Hb_114121_010 Hb_002729_020--Hb_114121_010 Hb_033594_050 Hb_033594_050 Hb_005016_110--Hb_033594_050 Hb_002585_060 Hb_002585_060 Hb_005016_110--Hb_002585_060 Hb_005016_110--Hb_002815_040 Hb_058095_030 Hb_058095_030 Hb_005016_110--Hb_058095_030 Hb_048476_070 Hb_048476_070 Hb_005016_110--Hb_048476_070 Hb_000832_010--Hb_001871_030 Hb_006274_020 Hb_006274_020 Hb_000832_010--Hb_006274_020 Hb_005765_020 Hb_005765_020 Hb_000832_010--Hb_005765_020 Hb_019641_020 Hb_019641_020 Hb_000832_010--Hb_019641_020 Hb_072173_010 Hb_072173_010 Hb_000832_010--Hb_072173_010 Hb_003927_020 Hb_003927_020 Hb_001871_030--Hb_003927_020 Hb_000167_070 Hb_000167_070 Hb_001871_030--Hb_000167_070 Hb_006992_030 Hb_006992_030 Hb_001871_030--Hb_006992_030 Hb_001871_030--Hb_005765_020 Hb_007885_110 Hb_007885_110 Hb_001871_030--Hb_007885_110 Hb_003413_010 Hb_003413_010 Hb_000136_080--Hb_003413_010 Hb_003900_040 Hb_003900_040 Hb_000136_080--Hb_003900_040 Hb_004899_210 Hb_004899_210 Hb_000136_080--Hb_004899_210 Hb_001174_050 Hb_001174_050 Hb_000136_080--Hb_001174_050 Hb_159124_010 Hb_159124_010 Hb_000136_080--Hb_159124_010 Hb_179183_010 Hb_179183_010 Hb_000136_080--Hb_179183_010 Hb_000061_110 Hb_000061_110 Hb_002815_040--Hb_000061_110 Hb_002815_040--Hb_048476_070 Hb_002815_040--Hb_002585_060 Hb_011242_070 Hb_011242_070 Hb_002815_040--Hb_011242_070 Hb_000236_430 Hb_000236_430 Hb_002815_040--Hb_000236_430 Hb_000600_080 Hb_000600_080 Hb_002815_040--Hb_000600_080 Hb_002733_050 Hb_002733_050 Hb_114121_010--Hb_002733_050 Hb_168909_010 Hb_168909_010 Hb_114121_010--Hb_168909_010 Hb_008755_020 Hb_008755_020 Hb_114121_010--Hb_008755_020 Hb_114121_010--Hb_179183_010 Hb_006013_030 Hb_006013_030 Hb_114121_010--Hb_006013_030 Hb_000280_120 Hb_000280_120 Hb_114121_010--Hb_000280_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0107421 0.0857022 0.00815326 0 0 0.0049273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0183696 0.0986891 0.204936

CAGE analysis