Hb_006274_020

Information

Type -
Description -
Location Contig6274: 20243-21816
Sequence    

Annotation

kegg
ID rcu:RCOM_1617440
description structural constituent of cell wall, putative
nr
ID XP_002511966.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID Q9M9A5
description Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis thaliana GN=PCR6 PE=2 SV=1
trembl
ID B9RE27
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_1617440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006274_020 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_002733_050 0.1498628171 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_019641_020 0.1501221679 - - hypothetical protein AALP_AAs49670U000100, partial [Arabis alpina]
4 Hb_020400_010 0.1532934435 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
5 Hb_012538_010 0.1544984844 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_114121_010 0.1561120439 - - -
7 Hb_006013_030 0.1599894495 - - -
8 Hb_008755_020 0.1628985335 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000832_010 0.1633063805 - - hypothetical protein VITISV_005044 [Vitis vinifera]
10 Hb_110782_010 0.1672575392 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
11 Hb_014967_010 0.1767038102 - - -
12 Hb_168909_010 0.182486157 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
13 Hb_159404_010 0.1857097302 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_056506_080 0.1904326078 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
15 Hb_001871_030 0.194952313 - - conserved hypothetical protein [Ricinus communis]
16 Hb_179183_010 0.1953551855 - - RALF-LIKE 32 family protein [Populus trichocarpa]
17 Hb_072173_010 0.1972135259 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
18 Hb_000959_370 0.198534986 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
19 Hb_000280_120 0.2056713848 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
20 Hb_006120_160 0.2105046573 - - -

Gene co-expression network

sample Hb_006274_020 Hb_006274_020 Hb_002733_050 Hb_002733_050 Hb_006274_020--Hb_002733_050 Hb_019641_020 Hb_019641_020 Hb_006274_020--Hb_019641_020 Hb_020400_010 Hb_020400_010 Hb_006274_020--Hb_020400_010 Hb_012538_010 Hb_012538_010 Hb_006274_020--Hb_012538_010 Hb_114121_010 Hb_114121_010 Hb_006274_020--Hb_114121_010 Hb_006013_030 Hb_006013_030 Hb_006274_020--Hb_006013_030 Hb_002733_050--Hb_114121_010 Hb_002733_050--Hb_006013_030 Hb_168909_010 Hb_168909_010 Hb_002733_050--Hb_168909_010 Hb_008755_020 Hb_008755_020 Hb_002733_050--Hb_008755_020 Hb_000280_120 Hb_000280_120 Hb_002733_050--Hb_000280_120 Hb_002733_050--Hb_020400_010 Hb_044313_010 Hb_044313_010 Hb_019641_020--Hb_044313_010 Hb_000959_370 Hb_000959_370 Hb_019641_020--Hb_000959_370 Hb_019641_020--Hb_006013_030 Hb_032299_070 Hb_032299_070 Hb_019641_020--Hb_032299_070 Hb_019641_020--Hb_012538_010 Hb_110782_010 Hb_110782_010 Hb_020400_010--Hb_110782_010 Hb_014967_010 Hb_014967_010 Hb_020400_010--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_020400_010--Hb_159404_010 Hb_020400_010--Hb_008755_020 Hb_020400_010--Hb_114121_010 Hb_001021_050 Hb_001021_050 Hb_012538_010--Hb_001021_050 Hb_000832_010 Hb_000832_010 Hb_012538_010--Hb_000832_010 Hb_133047_030 Hb_133047_030 Hb_012538_010--Hb_133047_030 Hb_012538_010--Hb_000280_120 Hb_114121_010--Hb_168909_010 Hb_114121_010--Hb_008755_020 Hb_179183_010 Hb_179183_010 Hb_114121_010--Hb_179183_010 Hb_114121_010--Hb_006013_030 Hb_114121_010--Hb_000280_120 Hb_006013_030--Hb_000959_370 Hb_006013_030--Hb_000280_120 Hb_006013_030--Hb_168909_010 Hb_006013_030--Hb_020400_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0625575 0 0 0 0.0150269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.110689 0.191061

CAGE analysis