Hb_012538_010

Information

Type -
Description -
Location Contig12538: 12614-24935
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012538_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_006274_020 0.1544984844 - - structural constituent of cell wall, putative [Ricinus communis]
3 Hb_001021_050 0.1802801006 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_019641_020 0.1816201676 - - hypothetical protein AALP_AAs49670U000100, partial [Arabis alpina]
5 Hb_000832_010 0.2124909244 - - hypothetical protein VITISV_005044 [Vitis vinifera]
6 Hb_133047_030 0.2245800115 - - nuclear acid binding protein, putative [Ricinus communis]
7 Hb_000280_120 0.2266365453 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
8 Hb_168909_010 0.2290824949 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
9 Hb_000243_050 0.2314236296 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_138667_010 0.2328794124 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
11 Hb_002733_050 0.2363492501 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_114121_010 0.2374309277 - - -
13 Hb_006013_030 0.2376284497 - - -
14 Hb_002815_040 0.2406418789 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
15 Hb_028872_040 0.2447965064 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001301_070 0.2488059978 - - -
17 Hb_003938_100 0.2508028071 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000959_370 0.2589225811 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
19 Hb_179183_010 0.2592295285 - - RALF-LIKE 32 family protein [Populus trichocarpa]
20 Hb_000192_060 0.2594314417 - - -

Gene co-expression network

sample Hb_012538_010 Hb_012538_010 Hb_006274_020 Hb_006274_020 Hb_012538_010--Hb_006274_020 Hb_001021_050 Hb_001021_050 Hb_012538_010--Hb_001021_050 Hb_019641_020 Hb_019641_020 Hb_012538_010--Hb_019641_020 Hb_000832_010 Hb_000832_010 Hb_012538_010--Hb_000832_010 Hb_133047_030 Hb_133047_030 Hb_012538_010--Hb_133047_030 Hb_000280_120 Hb_000280_120 Hb_012538_010--Hb_000280_120 Hb_002733_050 Hb_002733_050 Hb_006274_020--Hb_002733_050 Hb_006274_020--Hb_019641_020 Hb_020400_010 Hb_020400_010 Hb_006274_020--Hb_020400_010 Hb_114121_010 Hb_114121_010 Hb_006274_020--Hb_114121_010 Hb_006013_030 Hb_006013_030 Hb_006274_020--Hb_006013_030 Hb_004981_010 Hb_004981_010 Hb_001021_050--Hb_004981_010 Hb_143398_020 Hb_143398_020 Hb_001021_050--Hb_143398_020 Hb_003717_020 Hb_003717_020 Hb_001021_050--Hb_003717_020 Hb_132317_010 Hb_132317_010 Hb_001021_050--Hb_132317_010 Hb_001021_050--Hb_133047_030 Hb_044313_010 Hb_044313_010 Hb_019641_020--Hb_044313_010 Hb_000959_370 Hb_000959_370 Hb_019641_020--Hb_000959_370 Hb_019641_020--Hb_006013_030 Hb_032299_070 Hb_032299_070 Hb_019641_020--Hb_032299_070 Hb_001871_030 Hb_001871_030 Hb_000832_010--Hb_001871_030 Hb_000832_010--Hb_006274_020 Hb_002729_020 Hb_002729_020 Hb_000832_010--Hb_002729_020 Hb_005765_020 Hb_005765_020 Hb_000832_010--Hb_005765_020 Hb_000832_010--Hb_019641_020 Hb_072173_010 Hb_072173_010 Hb_000832_010--Hb_072173_010 Hb_133047_030--Hb_132317_010 Hb_000346_080 Hb_000346_080 Hb_133047_030--Hb_000346_080 Hb_006103_040 Hb_006103_040 Hb_133047_030--Hb_006103_040 Hb_033286_020 Hb_033286_020 Hb_133047_030--Hb_033286_020 Hb_002888_080 Hb_002888_080 Hb_133047_030--Hb_002888_080 Hb_138667_010 Hb_138667_010 Hb_000280_120--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_000280_120--Hb_000243_050 Hb_168909_010 Hb_168909_010 Hb_000280_120--Hb_168909_010 Hb_028872_040 Hb_028872_040 Hb_000280_120--Hb_028872_040 Hb_003938_100 Hb_003938_100 Hb_000280_120--Hb_003938_100 Hb_000280_120--Hb_006013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0108612 0 0 0 0.00400254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00932733 0.0168444

CAGE analysis