Hb_006103_040

Information

Type -
Description -
Location Contig6103: 57901-60989
Sequence    

Annotation

kegg
ID tcc:TCM_018243
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006103_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001310_100 0.2246213471 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Jatropha curcas]
3 Hb_133047_030 0.2290694457 - - nuclear acid binding protein, putative [Ricinus communis]
4 Hb_004687_010 0.2474329617 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000574_140 0.2628112124 - - -
6 Hb_071160_010 0.2667420741 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
7 Hb_132317_010 0.2756597626 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_001241_050 0.2781249341 - - PREDICTED: uncharacterized protein LOC104880586 isoform X1 [Vitis vinifera]
9 Hb_002232_050 0.2858994327 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
10 Hb_001485_010 0.2890608763 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_001377_250 0.2951861743 - - dynamin, putative [Ricinus communis]
12 Hb_002475_130 0.2976643541 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
13 Hb_004631_130 0.2984462447 - - helicase domain-containing family protein [Populus trichocarpa]
14 Hb_000233_100 0.2993715322 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_001172_080 0.2994945391 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_000346_080 0.3020076996 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
17 Hb_146617_010 0.302812591 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
18 Hb_001769_130 0.3057698783 - - -
19 Hb_005999_010 0.3069655257 - - Sugar transporter ERD6-like 5 [Morus notabilis]
20 Hb_002078_090 0.3115095808 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_006103_040 Hb_006103_040 Hb_001310_100 Hb_001310_100 Hb_006103_040--Hb_001310_100 Hb_133047_030 Hb_133047_030 Hb_006103_040--Hb_133047_030 Hb_004687_010 Hb_004687_010 Hb_006103_040--Hb_004687_010 Hb_000574_140 Hb_000574_140 Hb_006103_040--Hb_000574_140 Hb_071160_010 Hb_071160_010 Hb_006103_040--Hb_071160_010 Hb_132317_010 Hb_132317_010 Hb_006103_040--Hb_132317_010 Hb_007259_020 Hb_007259_020 Hb_001310_100--Hb_007259_020 Hb_002475_130 Hb_002475_130 Hb_001310_100--Hb_002475_130 Hb_000233_100 Hb_000233_100 Hb_001310_100--Hb_000233_100 Hb_000532_130 Hb_000532_130 Hb_001310_100--Hb_000532_130 Hb_002232_050 Hb_002232_050 Hb_001310_100--Hb_002232_050 Hb_133047_030--Hb_132317_010 Hb_000346_080 Hb_000346_080 Hb_133047_030--Hb_000346_080 Hb_012538_010 Hb_012538_010 Hb_133047_030--Hb_012538_010 Hb_033286_020 Hb_033286_020 Hb_133047_030--Hb_033286_020 Hb_002888_080 Hb_002888_080 Hb_133047_030--Hb_002888_080 Hb_004687_010--Hb_000574_140 Hb_004241_030 Hb_004241_030 Hb_004687_010--Hb_004241_030 Hb_001241_050 Hb_001241_050 Hb_004687_010--Hb_001241_050 Hb_008783_010 Hb_008783_010 Hb_004687_010--Hb_008783_010 Hb_105581_010 Hb_105581_010 Hb_004687_010--Hb_105581_010 Hb_000574_140--Hb_004241_030 Hb_011280_020 Hb_011280_020 Hb_000574_140--Hb_011280_020 Hb_000505_120 Hb_000505_120 Hb_000574_140--Hb_000505_120 Hb_000574_140--Hb_001241_050 Hb_001485_010 Hb_001485_010 Hb_071160_010--Hb_001485_010 Hb_071160_010--Hb_000233_100 Hb_001091_020 Hb_001091_020 Hb_071160_010--Hb_001091_020 Hb_010261_030 Hb_010261_030 Hb_071160_010--Hb_010261_030 Hb_007709_010 Hb_007709_010 Hb_071160_010--Hb_007709_010 Hb_002218_070 Hb_002218_070 Hb_071160_010--Hb_002218_070 Hb_007193_050 Hb_007193_050 Hb_132317_010--Hb_007193_050 Hb_132317_010--Hb_000346_080 Hb_024468_040 Hb_024468_040 Hb_132317_010--Hb_024468_040 Hb_027380_250 Hb_027380_250 Hb_132317_010--Hb_027380_250 Hb_132317_010--Hb_012538_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00894464 0.0464536 0 0 0.00723316 0.00631454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0256019 0.0274631

CAGE analysis