Hb_004687_010

Information

Type -
Description -
Location Contig4687: 14427-19250
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004687_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_000574_140 0.2199599272 - - -
3 Hb_004241_030 0.2293342555 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001241_050 0.2351854372 - - PREDICTED: uncharacterized protein LOC104880586 isoform X1 [Vitis vinifera]
5 Hb_006103_040 0.2474329617 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_008783_010 0.2665450948 - - -
7 Hb_105581_010 0.2675735781 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_012184_030 0.2694996845 - - -
9 Hb_000463_030 0.2704652897 - - -
10 Hb_000505_120 0.2844943711 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_146617_010 0.2910613672 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
12 Hb_011280_020 0.2967221869 - - polyprotein [Oryza australiensis]
13 Hb_000089_050 0.3037239678 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_114988_010 0.3142568998 - - -
15 Hb_003413_010 0.316596725 - - hypothetical protein, partial [Pseudomonas fluorescens]
16 Hb_002637_020 0.3231317604 - - -
17 Hb_000085_030 0.324545974 - - -
18 Hb_097006_010 0.3255178123 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
19 Hb_001417_020 0.3283041444 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
20 Hb_015076_020 0.3286945033 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004687_010 Hb_004687_010 Hb_000574_140 Hb_000574_140 Hb_004687_010--Hb_000574_140 Hb_004241_030 Hb_004241_030 Hb_004687_010--Hb_004241_030 Hb_001241_050 Hb_001241_050 Hb_004687_010--Hb_001241_050 Hb_006103_040 Hb_006103_040 Hb_004687_010--Hb_006103_040 Hb_008783_010 Hb_008783_010 Hb_004687_010--Hb_008783_010 Hb_105581_010 Hb_105581_010 Hb_004687_010--Hb_105581_010 Hb_000574_140--Hb_004241_030 Hb_011280_020 Hb_011280_020 Hb_000574_140--Hb_011280_020 Hb_000505_120 Hb_000505_120 Hb_000574_140--Hb_000505_120 Hb_000574_140--Hb_006103_040 Hb_000574_140--Hb_001241_050 Hb_015076_020 Hb_015076_020 Hb_004241_030--Hb_015076_020 Hb_004241_030--Hb_000505_120 Hb_004241_030--Hb_011280_020 Hb_004241_030--Hb_008783_010 Hb_097006_010 Hb_097006_010 Hb_001241_050--Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_001241_050--Hb_010164_040 Hb_000612_050 Hb_000612_050 Hb_001241_050--Hb_000612_050 Hb_001241_050--Hb_006103_040 Hb_001310_100 Hb_001310_100 Hb_006103_040--Hb_001310_100 Hb_133047_030 Hb_133047_030 Hb_006103_040--Hb_133047_030 Hb_071160_010 Hb_071160_010 Hb_006103_040--Hb_071160_010 Hb_132317_010 Hb_132317_010 Hb_006103_040--Hb_132317_010 Hb_008783_010--Hb_000505_120 Hb_008783_010--Hb_015076_020 Hb_008783_010--Hb_011280_020 Hb_008783_010--Hb_097006_010 Hb_008783_010--Hb_010164_040 Hb_000463_030 Hb_000463_030 Hb_105581_010--Hb_000463_030 Hb_000089_050 Hb_000089_050 Hb_105581_010--Hb_000089_050 Hb_012184_030 Hb_012184_030 Hb_105581_010--Hb_012184_030 Hb_148593_010 Hb_148593_010 Hb_105581_010--Hb_148593_010 Hb_017604_030 Hb_017604_030 Hb_105581_010--Hb_017604_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.019794 0.0199771 0 0 0.00874488 0.0042569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0131964 0.0357134

CAGE analysis