Hb_004241_030

Information

Type -
Description -
Location Contig4241: 9705-14028
Sequence    

Annotation

kegg
ID rcu:RCOM_0032240
description hypothetical protein
nr
ID XP_002533738.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFU7
description Putative F-box/LRR-repeat protein At5g54820 OS=Arabidopsis thaliana GN=At5g54820 PE=3 SV=1
trembl
ID B9T669
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0032240 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at3g62230-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000574_140 0.1970403988 - - -
3 Hb_015076_020 0.1983401829 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
4 Hb_000505_120 0.2086478327 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_004687_010 0.2293342555 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_011280_020 0.2301108104 - - polyprotein [Oryza australiensis]
7 Hb_008783_010 0.2347795089 - - -
8 Hb_012184_030 0.2382051038 - - -
9 Hb_015778_020 0.2608735113 - - Putative methyltransferase family protein [Solanum demissum]
10 Hb_010452_010 0.2631674644 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
11 Hb_061940_010 0.2642147335 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
12 Hb_003413_010 0.2881176954 - - hypothetical protein, partial [Pseudomonas fluorescens]
13 Hb_001241_050 0.2883935042 - - PREDICTED: uncharacterized protein LOC104880586 isoform X1 [Vitis vinifera]
14 Hb_117001_010 0.2883992462 - - -
15 Hb_004010_020 0.2953641734 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_000518_040 0.3052088468 - - -
17 Hb_083663_010 0.3059468808 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_004520_030 0.3087565456 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_158203_010 0.3104631284 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
20 Hb_000136_080 0.3112159399 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]

Gene co-expression network

sample Hb_004241_030 Hb_004241_030 Hb_000574_140 Hb_000574_140 Hb_004241_030--Hb_000574_140 Hb_015076_020 Hb_015076_020 Hb_004241_030--Hb_015076_020 Hb_000505_120 Hb_000505_120 Hb_004241_030--Hb_000505_120 Hb_004687_010 Hb_004687_010 Hb_004241_030--Hb_004687_010 Hb_011280_020 Hb_011280_020 Hb_004241_030--Hb_011280_020 Hb_008783_010 Hb_008783_010 Hb_004241_030--Hb_008783_010 Hb_000574_140--Hb_004687_010 Hb_000574_140--Hb_011280_020 Hb_000574_140--Hb_000505_120 Hb_006103_040 Hb_006103_040 Hb_000574_140--Hb_006103_040 Hb_001241_050 Hb_001241_050 Hb_000574_140--Hb_001241_050 Hb_015076_020--Hb_000505_120 Hb_015076_020--Hb_008783_010 Hb_010452_010 Hb_010452_010 Hb_015076_020--Hb_010452_010 Hb_015076_020--Hb_011280_020 Hb_015778_020 Hb_015778_020 Hb_015076_020--Hb_015778_020 Hb_000505_120--Hb_011280_020 Hb_000505_120--Hb_008783_010 Hb_003413_010 Hb_003413_010 Hb_000505_120--Hb_003413_010 Hb_097006_010 Hb_097006_010 Hb_000505_120--Hb_097006_010 Hb_004687_010--Hb_001241_050 Hb_004687_010--Hb_006103_040 Hb_004687_010--Hb_008783_010 Hb_105581_010 Hb_105581_010 Hb_004687_010--Hb_105581_010 Hb_011280_020--Hb_008783_010 Hb_011280_020--Hb_003413_010 Hb_083663_010 Hb_083663_010 Hb_011280_020--Hb_083663_010 Hb_008783_010--Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_008783_010--Hb_010164_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0254239 0.0315466 0 0 0.0119038 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00908076 0.0955247

CAGE analysis