Hb_015778_020

Information

Type -
Description -
Location Contig15778: 43064-43689
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID AAT38756.2
description Putative methyltransferase family protein [Solanum demissum]
swissprot
ID -
description -
trembl
ID Q6L3P1
description Putative methyltransferase family protein OS=Solanum demissum GN=SDM1_42t00008 PE=4 SV=2
Gene Ontology
ID GO:0016779
description dna-directed rna polymerase i subunit rpa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13787: 44565-44892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015778_020 0.0 - - Putative methyltransferase family protein [Solanum demissum]
2 Hb_010452_010 0.0500309179 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
3 Hb_015076_020 0.1946565238 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
4 Hb_083663_010 0.1966451519 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_002520_010 0.2497477859 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
6 Hb_000505_120 0.2507135673 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_056095_010 0.259716992 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004241_030 0.2608735113 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011280_020 0.2659215159 - - polyprotein [Oryza australiensis]
10 Hb_008783_010 0.2688892497 - - -
11 Hb_081703_020 0.2898809673 - - -
12 Hb_061940_010 0.3021651902 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
13 Hb_012807_090 0.3240216111 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
14 Hb_004951_050 0.3251365073 - - conserved hypothetical protein [Ricinus communis]
15 Hb_014929_010 0.3257385409 - - -
16 Hb_002850_030 0.3269049932 - - -
17 Hb_000143_070 0.3271860886 - - -
18 Hb_000300_460 0.3284938694 - - Mavicyanin, putative [Ricinus communis]
19 Hb_158203_010 0.3288891876 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
20 Hb_003279_010 0.3291642526 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_015778_020 Hb_015778_020 Hb_010452_010 Hb_010452_010 Hb_015778_020--Hb_010452_010 Hb_015076_020 Hb_015076_020 Hb_015778_020--Hb_015076_020 Hb_083663_010 Hb_083663_010 Hb_015778_020--Hb_083663_010 Hb_002520_010 Hb_002520_010 Hb_015778_020--Hb_002520_010 Hb_000505_120 Hb_000505_120 Hb_015778_020--Hb_000505_120 Hb_056095_010 Hb_056095_010 Hb_015778_020--Hb_056095_010 Hb_010452_010--Hb_015076_020 Hb_010452_010--Hb_056095_010 Hb_010452_010--Hb_083663_010 Hb_004241_030 Hb_004241_030 Hb_010452_010--Hb_004241_030 Hb_010452_010--Hb_000505_120 Hb_015076_020--Hb_000505_120 Hb_008783_010 Hb_008783_010 Hb_015076_020--Hb_008783_010 Hb_011280_020 Hb_011280_020 Hb_015076_020--Hb_011280_020 Hb_015076_020--Hb_004241_030 Hb_083663_010--Hb_011280_020 Hb_011344_150 Hb_011344_150 Hb_083663_010--Hb_011344_150 Hb_083663_010--Hb_002520_010 Hb_083663_010--Hb_000505_120 Hb_002520_010--Hb_010452_010 Hb_000085_030 Hb_000085_030 Hb_002520_010--Hb_000085_030 Hb_000671_140 Hb_000671_140 Hb_002520_010--Hb_000671_140 Hb_000140_430 Hb_000140_430 Hb_002520_010--Hb_000140_430 Hb_000505_120--Hb_011280_020 Hb_000505_120--Hb_008783_010 Hb_003413_010 Hb_003413_010 Hb_000505_120--Hb_003413_010 Hb_000505_120--Hb_004241_030 Hb_097006_010 Hb_097006_010 Hb_000505_120--Hb_097006_010 Hb_061940_010 Hb_061940_010 Hb_056095_010--Hb_061940_010 Hb_158203_010 Hb_158203_010 Hb_056095_010--Hb_158203_010 Hb_152483_010 Hb_152483_010 Hb_056095_010--Hb_152483_010 Hb_000710_100 Hb_000710_100 Hb_056095_010--Hb_000710_100 Hb_041711_040 Hb_041711_040 Hb_056095_010--Hb_041711_040 Hb_010623_010 Hb_010623_010 Hb_056095_010--Hb_010623_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121042 0.0989376 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.297472

CAGE analysis