Hb_002520_010

Information

Type -
Description -
Location Contig2520: 73758-78364
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb019121mg
description hypothetical protein
nr
ID XP_012453364.1
description PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M5XLP5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002520_010 0.0 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
2 Hb_083663_010 0.2489487746 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_015778_020 0.2497477859 - - Putative methyltransferase family protein [Solanum demissum]
4 Hb_010452_010 0.2750215315 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
5 Hb_000085_030 0.3054366822 - - -
6 Hb_000671_140 0.3082250222 - - hypothetical protein VITISV_003767 [Vitis vinifera]
7 Hb_000140_430 0.3109932517 - - -
8 Hb_007148_010 0.3114047816 - - PREDICTED: uncharacterized protein LOC103427080 [Malus domestica]
9 Hb_011280_020 0.3228945685 - - polyprotein [Oryza australiensis]
10 Hb_000505_120 0.3323419237 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_015076_020 0.3357172216 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
12 Hb_005401_010 0.3389065701 - - -
13 Hb_000089_050 0.3417152197 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000098_090 0.3467278974 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
15 Hb_003717_020 0.3468472221 - - -
16 Hb_004687_010 0.3498300061 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_003605_010 0.3516859775 - - -
18 Hb_008783_010 0.3525883418 - - -
19 Hb_004241_030 0.3560612555 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004981_010 0.359807544 - - -

Gene co-expression network

sample Hb_002520_010 Hb_002520_010 Hb_083663_010 Hb_083663_010 Hb_002520_010--Hb_083663_010 Hb_015778_020 Hb_015778_020 Hb_002520_010--Hb_015778_020 Hb_010452_010 Hb_010452_010 Hb_002520_010--Hb_010452_010 Hb_000085_030 Hb_000085_030 Hb_002520_010--Hb_000085_030 Hb_000671_140 Hb_000671_140 Hb_002520_010--Hb_000671_140 Hb_000140_430 Hb_000140_430 Hb_002520_010--Hb_000140_430 Hb_083663_010--Hb_015778_020 Hb_011280_020 Hb_011280_020 Hb_083663_010--Hb_011280_020 Hb_011344_150 Hb_011344_150 Hb_083663_010--Hb_011344_150 Hb_083663_010--Hb_010452_010 Hb_000505_120 Hb_000505_120 Hb_083663_010--Hb_000505_120 Hb_015778_020--Hb_010452_010 Hb_015076_020 Hb_015076_020 Hb_015778_020--Hb_015076_020 Hb_015778_020--Hb_000505_120 Hb_056095_010 Hb_056095_010 Hb_015778_020--Hb_056095_010 Hb_010452_010--Hb_015076_020 Hb_010452_010--Hb_056095_010 Hb_004241_030 Hb_004241_030 Hb_010452_010--Hb_004241_030 Hb_010452_010--Hb_000505_120 Hb_000085_030--Hb_000140_430 Hb_012184_030 Hb_012184_030 Hb_000085_030--Hb_012184_030 Hb_002637_020 Hb_002637_020 Hb_000085_030--Hb_002637_020 Hb_000085_030--Hb_000671_140 Hb_001160_010 Hb_001160_010 Hb_000085_030--Hb_001160_010 Hb_005401_010 Hb_005401_010 Hb_000671_140--Hb_005401_010 Hb_001769_130 Hb_001769_130 Hb_000671_140--Hb_001769_130 Hb_044086_010 Hb_044086_010 Hb_000671_140--Hb_044086_010 Hb_000840_170 Hb_000840_170 Hb_000671_140--Hb_000840_170 Hb_006573_010 Hb_006573_010 Hb_000671_140--Hb_006573_010 Hb_000671_140--Hb_000140_430 Hb_000140_430--Hb_001160_010 Hb_000140_430--Hb_002637_020 Hb_000140_430--Hb_012184_030 Hb_005451_020 Hb_005451_020 Hb_000140_430--Hb_005451_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0171315 0.021187 0 0 0 0.00749078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.032464

CAGE analysis