Hb_002637_020

Information

Type -
Description -
Location Contig2637: 6438-15431
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002637_020 0.0 - - -
2 Hb_000078_170 0.2424879922 - - -
3 Hb_000085_030 0.2615124702 - - -
4 Hb_002311_230 0.2794687436 - - -
5 Hb_000330_080 0.282483588 - - auxilin, putative [Ricinus communis]
6 Hb_000140_430 0.2847376039 - - -
7 Hb_001773_010 0.2922393143 - - -
8 Hb_011639_150 0.2953576081 - - -
9 Hb_008556_020 0.2981378456 - - -
10 Hb_007933_020 0.2982555374 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
11 Hb_010775_050 0.3000963824 - - -
12 Hb_000028_640 0.3026226041 - - Auxin efflux carrier component, putative [Ricinus communis]
13 Hb_005962_010 0.3032884582 - - -
14 Hb_001709_130 0.3048970586 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_004128_120 0.3113433353 - - hypothetical protein OsJ_10386 [Oryza sativa Japonica Group]
16 Hb_010320_020 0.3145505502 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_012184_030 0.3153622088 - - -
18 Hb_000258_020 0.3159563996 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
19 Hb_005451_020 0.3164096573 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
20 Hb_004361_020 0.3190524704 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]

Gene co-expression network

sample Hb_002637_020 Hb_002637_020 Hb_000078_170 Hb_000078_170 Hb_002637_020--Hb_000078_170 Hb_000085_030 Hb_000085_030 Hb_002637_020--Hb_000085_030 Hb_002311_230 Hb_002311_230 Hb_002637_020--Hb_002311_230 Hb_000330_080 Hb_000330_080 Hb_002637_020--Hb_000330_080 Hb_000140_430 Hb_000140_430 Hb_002637_020--Hb_000140_430 Hb_001773_010 Hb_001773_010 Hb_002637_020--Hb_001773_010 Hb_005962_010 Hb_005962_010 Hb_000078_170--Hb_005962_010 Hb_011639_150 Hb_011639_150 Hb_000078_170--Hb_011639_150 Hb_000078_170--Hb_000330_080 Hb_008556_020 Hb_008556_020 Hb_000078_170--Hb_008556_020 Hb_001709_130 Hb_001709_130 Hb_000078_170--Hb_001709_130 Hb_000078_170--Hb_002311_230 Hb_000085_030--Hb_000140_430 Hb_012184_030 Hb_012184_030 Hb_000085_030--Hb_012184_030 Hb_002520_010 Hb_002520_010 Hb_000085_030--Hb_002520_010 Hb_000671_140 Hb_000671_140 Hb_000085_030--Hb_000671_140 Hb_001160_010 Hb_001160_010 Hb_000085_030--Hb_001160_010 Hb_002311_230--Hb_005962_010 Hb_000483_180 Hb_000483_180 Hb_002311_230--Hb_000483_180 Hb_119886_040 Hb_119886_040 Hb_002311_230--Hb_119886_040 Hb_007044_010 Hb_007044_010 Hb_002311_230--Hb_007044_010 Hb_002311_230--Hb_008556_020 Hb_011639_010 Hb_011639_010 Hb_002311_230--Hb_011639_010 Hb_032920_100 Hb_032920_100 Hb_000330_080--Hb_032920_100 Hb_000330_080--Hb_001709_130 Hb_008123_010 Hb_008123_010 Hb_000330_080--Hb_008123_010 Hb_004884_020 Hb_004884_020 Hb_000330_080--Hb_004884_020 Hb_003058_020 Hb_003058_020 Hb_000330_080--Hb_003058_020 Hb_000140_430--Hb_001160_010 Hb_000140_430--Hb_012184_030 Hb_000140_430--Hb_000671_140 Hb_005451_020 Hb_005451_020 Hb_000140_430--Hb_005451_020 Hb_010775_050 Hb_010775_050 Hb_001773_010--Hb_010775_050 Hb_001773_010--Hb_000078_170 Hb_001773_010--Hb_005451_020 Hb_001965_020 Hb_001965_020 Hb_001773_010--Hb_001965_020 Hb_001773_010--Hb_000330_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.322139 0.0652748 0 0 0.28778 0.135939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0589531 0.249447

CAGE analysis