Hb_001965_020

Information

Type -
Description -
Location Contig1965: 18030-19082
Sequence    

Annotation

kegg
ID pmum:103335175
description uncharacterized LOC103335175
nr
ID KJB79419.1
description hypothetical protein B456_013G048700 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2VAQ8
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G048700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001965_020 0.0 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
2 Hb_001031_050 0.2460150912 - - -
3 Hb_000330_080 0.2657719717 - - auxilin, putative [Ricinus communis]
4 Hb_032920_100 0.271757778 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
5 Hb_001709_130 0.2805683125 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_021068_010 0.2854786459 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
7 Hb_183574_010 0.2882432833 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_001773_010 0.290670479 - - -
9 Hb_010775_050 0.2989753107 - - -
10 Hb_001496_030 0.3070775908 - - hypothetical protein CISIN_1g0170981mg, partial [Citrus sinensis]
11 Hb_001160_010 0.3113227609 - - -
12 Hb_002518_110 0.3163745383 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
13 Hb_001019_120 0.317916974 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
14 Hb_006674_020 0.3200240763 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_008123_010 0.3201845508 - - -
16 Hb_000072_040 0.3229497459 - - -
17 Hb_008727_130 0.3267990208 - - hypothetical protein EUGRSUZ_J01958 [Eucalyptus grandis]
18 Hb_010320_020 0.3305648247 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_178884_010 0.3324955248 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
20 Hb_105581_010 0.3353219787 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_001965_020 Hb_001965_020 Hb_001031_050 Hb_001031_050 Hb_001965_020--Hb_001031_050 Hb_000330_080 Hb_000330_080 Hb_001965_020--Hb_000330_080 Hb_032920_100 Hb_032920_100 Hb_001965_020--Hb_032920_100 Hb_001709_130 Hb_001709_130 Hb_001965_020--Hb_001709_130 Hb_021068_010 Hb_021068_010 Hb_001965_020--Hb_021068_010 Hb_183574_010 Hb_183574_010 Hb_001965_020--Hb_183574_010 Hb_006674_020 Hb_006674_020 Hb_001031_050--Hb_006674_020 Hb_002518_110 Hb_002518_110 Hb_001031_050--Hb_002518_110 Hb_002249_210 Hb_002249_210 Hb_001031_050--Hb_002249_210 Hb_008092_080 Hb_008092_080 Hb_001031_050--Hb_008092_080 Hb_011574_010 Hb_011574_010 Hb_001031_050--Hb_011574_010 Hb_000330_080--Hb_032920_100 Hb_000078_170 Hb_000078_170 Hb_000330_080--Hb_000078_170 Hb_000330_080--Hb_001709_130 Hb_008123_010 Hb_008123_010 Hb_000330_080--Hb_008123_010 Hb_004884_020 Hb_004884_020 Hb_000330_080--Hb_004884_020 Hb_003058_020 Hb_003058_020 Hb_000330_080--Hb_003058_020 Hb_000284_100 Hb_000284_100 Hb_032920_100--Hb_000284_100 Hb_001009_100 Hb_001009_100 Hb_032920_100--Hb_001009_100 Hb_032920_100--Hb_001709_130 Hb_032920_100--Hb_004884_020 Hb_032920_100--Hb_008123_010 Hb_001709_130--Hb_000078_170 Hb_011639_150 Hb_011639_150 Hb_001709_130--Hb_011639_150 Hb_001709_130--Hb_004884_020 Hb_001709_130--Hb_001009_100 Hb_004361_020 Hb_004361_020 Hb_001709_130--Hb_004361_020 Hb_001019_120 Hb_001019_120 Hb_021068_010--Hb_001019_120 Hb_021068_010--Hb_032920_100 Hb_021068_010--Hb_183574_010 Hb_009973_020 Hb_009973_020 Hb_021068_010--Hb_009973_020 Hb_021068_010--Hb_004361_020 Hb_021068_010--Hb_001709_130 Hb_183574_010--Hb_001709_130 Hb_183574_010--Hb_004361_020 Hb_005989_010 Hb_005989_010 Hb_183574_010--Hb_005989_010 Hb_047661_010 Hb_047661_010 Hb_183574_010--Hb_047661_010 Hb_005241_020 Hb_005241_020 Hb_183574_010--Hb_005241_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.298971 0 0.103789 0 0.371427 0.646174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.326046 0.773693

CAGE analysis