Hb_006674_020

Information

Type -
Description -
Location Contig6674: 20173-24672
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006674_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001031_050 0.2182872415 - - -
3 Hb_153142_010 0.2282495232 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
4 Hb_188319_010 0.2365625973 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
5 Hb_114010_020 0.2501350617 - - -
6 Hb_153665_010 0.2768802426 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
7 Hb_000599_070 0.2845064798 - - PREDICTED: patellin-4-like [Jatropha curcas]
8 Hb_012253_020 0.2868490355 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_009042_010 0.2911322432 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_188450_010 0.2914577221 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_004195_260 0.2937798507 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
12 Hb_123951_010 0.2975528753 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
13 Hb_000402_140 0.3049591247 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_002123_030 0.3095314606 - - hypothetical protein VITISV_003767 [Vitis vinifera]
15 Hb_030370_010 0.3138825629 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
16 Hb_014548_030 0.3161174917 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
17 Hb_001965_020 0.3200240763 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
18 Hb_005241_020 0.3203459052 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
19 Hb_062741_010 0.3219194956 - - -
20 Hb_003915_040 0.3262412889 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006674_020 Hb_006674_020 Hb_001031_050 Hb_001031_050 Hb_006674_020--Hb_001031_050 Hb_153142_010 Hb_153142_010 Hb_006674_020--Hb_153142_010 Hb_188319_010 Hb_188319_010 Hb_006674_020--Hb_188319_010 Hb_114010_020 Hb_114010_020 Hb_006674_020--Hb_114010_020 Hb_153665_010 Hb_153665_010 Hb_006674_020--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_006674_020--Hb_000599_070 Hb_001965_020 Hb_001965_020 Hb_001031_050--Hb_001965_020 Hb_002518_110 Hb_002518_110 Hb_001031_050--Hb_002518_110 Hb_002249_210 Hb_002249_210 Hb_001031_050--Hb_002249_210 Hb_008092_080 Hb_008092_080 Hb_001031_050--Hb_008092_080 Hb_011574_010 Hb_011574_010 Hb_001031_050--Hb_011574_010 Hb_153142_010--Hb_188319_010 Hb_153142_010--Hb_114010_020 Hb_000402_140 Hb_000402_140 Hb_153142_010--Hb_000402_140 Hb_004195_260 Hb_004195_260 Hb_153142_010--Hb_004195_260 Hb_005140_010 Hb_005140_010 Hb_153142_010--Hb_005140_010 Hb_188319_010--Hb_114010_020 Hb_188319_010--Hb_000402_140 Hb_188319_010--Hb_004195_260 Hb_188319_010--Hb_005140_010 Hb_114010_020--Hb_000402_140 Hb_114010_020--Hb_004195_260 Hb_114010_020--Hb_005140_010 Hb_153665_010--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_153665_010--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_153665_010--Hb_188450_010 Hb_123951_010 Hb_123951_010 Hb_153665_010--Hb_123951_010 Hb_012253_020 Hb_012253_020 Hb_153665_010--Hb_012253_020 Hb_030370_010 Hb_030370_010 Hb_153665_010--Hb_030370_010 Hb_000599_070--Hb_009042_010 Hb_000599_070--Hb_188450_010 Hb_000599_070--Hb_123951_010 Hb_000599_070--Hb_030370_010 Hb_004762_020 Hb_004762_020 Hb_000599_070--Hb_004762_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00727699 0.0127058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00515171 0.0276268

CAGE analysis