Hb_188450_010

Information

Type -
Description -
Location Contig188450: 10235-14842
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188450_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_009042_010 0.0009260259 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000599_070 0.0213943366 - - PREDICTED: patellin-4-like [Jatropha curcas]
4 Hb_153665_010 0.0515451152 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
5 Hb_123951_010 0.0851114941 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
6 Hb_004762_020 0.0934191584 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005405_010 0.0974754981 - - -
8 Hb_030370_010 0.1123351959 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
9 Hb_012253_020 0.142311056 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002123_030 0.1588875524 - - hypothetical protein VITISV_003767 [Vitis vinifera]
11 Hb_022599_010 0.182870161 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
12 Hb_005352_010 0.1897956888 - - -
13 Hb_001799_220 0.1942057943 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
14 Hb_000418_160 0.2170444675 - - -
15 Hb_009888_010 0.2200625608 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_027522_020 0.2217410395 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_062317_010 0.2245122075 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000421_280 0.228574712 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_002072_050 0.2285806621 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
20 Hb_006237_030 0.2494065334 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_188450_010 Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_188450_010--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_188450_010--Hb_000599_070 Hb_153665_010 Hb_153665_010 Hb_188450_010--Hb_153665_010 Hb_123951_010 Hb_123951_010 Hb_188450_010--Hb_123951_010 Hb_004762_020 Hb_004762_020 Hb_188450_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_188450_010--Hb_005405_010 Hb_009042_010--Hb_000599_070 Hb_009042_010--Hb_153665_010 Hb_009042_010--Hb_123951_010 Hb_009042_010--Hb_004762_020 Hb_009042_010--Hb_005405_010 Hb_000599_070--Hb_153665_010 Hb_000599_070--Hb_123951_010 Hb_030370_010 Hb_030370_010 Hb_000599_070--Hb_030370_010 Hb_000599_070--Hb_004762_020 Hb_153665_010--Hb_123951_010 Hb_012253_020 Hb_012253_020 Hb_153665_010--Hb_012253_020 Hb_153665_010--Hb_030370_010 Hb_123951_010--Hb_004762_020 Hb_005352_010 Hb_005352_010 Hb_123951_010--Hb_005352_010 Hb_004762_020--Hb_005405_010 Hb_022599_010 Hb_022599_010 Hb_004762_020--Hb_022599_010 Hb_004762_020--Hb_030370_010 Hb_005405_010--Hb_000599_070 Hb_005405_010--Hb_022599_010 Hb_005405_010--Hb_030370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00400561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00311141 0.0168567

CAGE analysis