Hb_000599_070

Information

Type -
Description -
Location Contig599: 50260-51988
Sequence    

Annotation

kegg
ID rcu:RCOM_0499130
description Patellin-4, putative
nr
ID XP_012085854.1
description PREDICTED: patellin-4-like [Jatropha curcas]
swissprot
ID Q94C59
description Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2
trembl
ID B9T1B9
description Patellin-4, putative OS=Ricinus communis GN=RCOM_0499130 PE=4 SV=1
Gene Ontology
ID GO:0016021
description patellin-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_070 0.0 - - PREDICTED: patellin-4-like [Jatropha curcas]
2 Hb_009042_010 0.0204687828 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_188450_010 0.0213943366 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_153665_010 0.0301853398 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
5 Hb_123951_010 0.0890799732 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
6 Hb_030370_010 0.1112686596 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
7 Hb_004762_020 0.1139888214 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_005405_010 0.1175455381 - - -
9 Hb_012253_020 0.1247833875 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002123_030 0.1478898875 - - hypothetical protein VITISV_003767 [Vitis vinifera]
11 Hb_001799_220 0.1939606897 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
12 Hb_022599_010 0.2028549143 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
13 Hb_005352_010 0.2055047717 - - -
14 Hb_009888_010 0.2296922776 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000418_160 0.2316900813 - - -
16 Hb_002072_050 0.2384228642 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
17 Hb_000421_280 0.23870229 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_027522_020 0.2395756859 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_062317_010 0.2444543892 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006237_030 0.2502307993 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000599_070 Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_000599_070--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_000599_070--Hb_188450_010 Hb_153665_010 Hb_153665_010 Hb_000599_070--Hb_153665_010 Hb_123951_010 Hb_123951_010 Hb_000599_070--Hb_123951_010 Hb_030370_010 Hb_030370_010 Hb_000599_070--Hb_030370_010 Hb_004762_020 Hb_004762_020 Hb_000599_070--Hb_004762_020 Hb_009042_010--Hb_188450_010 Hb_009042_010--Hb_153665_010 Hb_009042_010--Hb_123951_010 Hb_009042_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_009042_010--Hb_005405_010 Hb_188450_010--Hb_153665_010 Hb_188450_010--Hb_123951_010 Hb_188450_010--Hb_004762_020 Hb_188450_010--Hb_005405_010 Hb_153665_010--Hb_123951_010 Hb_012253_020 Hb_012253_020 Hb_153665_010--Hb_012253_020 Hb_153665_010--Hb_030370_010 Hb_123951_010--Hb_004762_020 Hb_005352_010 Hb_005352_010 Hb_123951_010--Hb_005352_010 Hb_002123_030 Hb_002123_030 Hb_030370_010--Hb_002123_030 Hb_001799_220 Hb_001799_220 Hb_030370_010--Hb_001799_220 Hb_030370_010--Hb_012253_020 Hb_030370_010--Hb_009042_010 Hb_030370_010--Hb_188450_010 Hb_004762_020--Hb_005405_010 Hb_022599_010 Hb_022599_010 Hb_004762_020--Hb_022599_010 Hb_004762_020--Hb_030370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0152151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0107316 0.0559937

CAGE analysis