Hb_001799_220

Information

Type transcription factor
Description TF Family: AP2
Location Contig1799: 220443-225065
Sequence    

Annotation

kegg
ID rcu:RCOM_1608410
description Ethylene-responsive transcription factor, putative
nr
ID XP_002511589.1
description Ethylene-responsive transcription factor, putative [Ricinus communis]
swissprot
ID Q8L9K1
description Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2
trembl
ID B9RD00
description Ethylene-responsive transcription factor, putative OS=Ricinus communis GN=RCOM_1608410 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_220 0.0 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
2 Hb_030370_010 0.0838679184 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
3 Hb_002123_030 0.0992752185 - - hypothetical protein VITISV_003767 [Vitis vinifera]
4 Hb_012253_020 0.1598640469 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_005405_010 0.1912761171 - - -
6 Hb_000832_350 0.1925232509 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_000599_070 0.1939606897 - - PREDICTED: patellin-4-like [Jatropha curcas]
8 Hb_009042_010 0.1941322388 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_188450_010 0.1942057943 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_004762_020 0.1983645677 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_153665_010 0.1985883936 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
12 Hb_076226_010 0.250175281 - - hypothetical protein VITISV_030432 [Vitis vinifera]
13 Hb_000418_160 0.2559798083 - - -
14 Hb_001496_140 0.2590014551 - - -
15 Hb_002090_010 0.2593525711 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
16 Hb_000208_070 0.26100055 - - -
17 Hb_008145_020 0.261001961 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
18 Hb_000173_090 0.2610059316 - - -
19 Hb_121689_030 0.2610124469 - - hypothetical protein, partial [Staphylococcus aureus]
20 Hb_108160_010 0.2610238628 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_001799_220 Hb_001799_220 Hb_030370_010 Hb_030370_010 Hb_001799_220--Hb_030370_010 Hb_002123_030 Hb_002123_030 Hb_001799_220--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_001799_220--Hb_012253_020 Hb_005405_010 Hb_005405_010 Hb_001799_220--Hb_005405_010 Hb_000832_350 Hb_000832_350 Hb_001799_220--Hb_000832_350 Hb_000599_070 Hb_000599_070 Hb_001799_220--Hb_000599_070 Hb_030370_010--Hb_002123_030 Hb_030370_010--Hb_012253_020 Hb_030370_010--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_030370_010--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_030370_010--Hb_188450_010 Hb_002123_030--Hb_012253_020 Hb_153665_010 Hb_153665_010 Hb_002123_030--Hb_153665_010 Hb_002123_030--Hb_000599_070 Hb_002123_030--Hb_009042_010 Hb_012253_020--Hb_153665_010 Hb_012253_020--Hb_000599_070 Hb_012253_020--Hb_009042_010 Hb_012253_020--Hb_188450_010 Hb_004762_020 Hb_004762_020 Hb_005405_010--Hb_004762_020 Hb_005405_010--Hb_188450_010 Hb_005405_010--Hb_009042_010 Hb_005405_010--Hb_000599_070 Hb_022599_010 Hb_022599_010 Hb_005405_010--Hb_022599_010 Hb_005405_010--Hb_030370_010 Hb_003297_040 Hb_003297_040 Hb_000832_350--Hb_003297_040 Hb_006856_020 Hb_006856_020 Hb_000832_350--Hb_006856_020 Hb_000832_350--Hb_030370_010 Hb_033908_010 Hb_033908_010 Hb_000832_350--Hb_033908_010 Hb_001496_140 Hb_001496_140 Hb_000832_350--Hb_001496_140 Hb_000599_070--Hb_009042_010 Hb_000599_070--Hb_188450_010 Hb_000599_070--Hb_153665_010 Hb_123951_010 Hb_123951_010 Hb_000599_070--Hb_123951_010 Hb_000599_070--Hb_004762_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0135824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0332979 0.0578093

CAGE analysis