Hb_009042_010

Information

Type -
Description -
Location Contig9042: 29779-43164
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID Q6F2D6
description Putative polyprotein, identical OS=Solanum demissum GN=SDM1_49t00014 PE=4 SV=2
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009042_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_188450_010 0.0009260259 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000599_070 0.0204687828 - - PREDICTED: patellin-4-like [Jatropha curcas]
4 Hb_153665_010 0.0506217166 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
5 Hb_123951_010 0.0851927371 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
6 Hb_004762_020 0.0943010227 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005405_010 0.0983304945 - - -
8 Hb_030370_010 0.1121895892 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
9 Hb_012253_020 0.1415240325 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002123_030 0.1583556439 - - hypothetical protein VITISV_003767 [Vitis vinifera]
11 Hb_022599_010 0.1837383848 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
12 Hb_005352_010 0.1904665807 - - -
13 Hb_001799_220 0.1941322388 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
14 Hb_000418_160 0.21765637 - - -
15 Hb_009888_010 0.2204561819 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_027522_020 0.2225131135 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_062317_010 0.2253790329 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002072_050 0.2289816677 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
19 Hb_000421_280 0.2289886646 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_006237_030 0.2494067015 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_009042_010 Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_009042_010--Hb_188450_010 Hb_000599_070 Hb_000599_070 Hb_009042_010--Hb_000599_070 Hb_153665_010 Hb_153665_010 Hb_009042_010--Hb_153665_010 Hb_123951_010 Hb_123951_010 Hb_009042_010--Hb_123951_010 Hb_004762_020 Hb_004762_020 Hb_009042_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_009042_010--Hb_005405_010 Hb_188450_010--Hb_000599_070 Hb_188450_010--Hb_153665_010 Hb_188450_010--Hb_123951_010 Hb_188450_010--Hb_004762_020 Hb_188450_010--Hb_005405_010 Hb_000599_070--Hb_153665_010 Hb_000599_070--Hb_123951_010 Hb_030370_010 Hb_030370_010 Hb_000599_070--Hb_030370_010 Hb_000599_070--Hb_004762_020 Hb_153665_010--Hb_123951_010 Hb_012253_020 Hb_012253_020 Hb_153665_010--Hb_012253_020 Hb_153665_010--Hb_030370_010 Hb_123951_010--Hb_004762_020 Hb_005352_010 Hb_005352_010 Hb_123951_010--Hb_005352_010 Hb_004762_020--Hb_005405_010 Hb_022599_010 Hb_022599_010 Hb_004762_020--Hb_022599_010 Hb_004762_020--Hb_030370_010 Hb_005405_010--Hb_000599_070 Hb_005405_010--Hb_022599_010 Hb_005405_010--Hb_030370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00446803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00345616 0.018692

CAGE analysis