Hb_022599_010

Information

Type -
Description -
Location Contig22599: 17494-21612
Sequence    

Annotation

kegg
ID tcc:TCM_010507
description hypothetical protein
nr
ID XP_007044788.1
description Uncharacterized protein TCM_010507 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E6J4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022599_010 0.0 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
2 Hb_062317_010 0.0558199144 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027522_020 0.0683814382 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_005352_010 0.091303056 - - -
5 Hb_004762_020 0.1140878052 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_005405_010 0.1192827073 - - -
7 Hb_002396_010 0.1627280426 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
8 Hb_001348_240 0.1627280567 - - Putative polyprotein, identical [Solanum demissum]
9 Hb_174010_030 0.1627285018 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_004145_030 0.1627290735 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_006599_040 0.1627293078 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_000777_010 0.1627319235 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
13 Hb_000905_010 0.1627339496 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
14 Hb_001782_090 0.1627385183 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
15 Hb_026317_020 0.1627635764 - - hypothetical protein VITISV_035911 [Vitis vinifera]
16 Hb_001307_230 0.1627937475 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
17 Hb_001172_110 0.1628554565 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
18 Hb_002375_100 0.1628922941 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
19 Hb_000723_150 0.1630219594 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
20 Hb_110426_010 0.1630614752 - - -

Gene co-expression network

sample Hb_022599_010 Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_022599_010--Hb_062317_010 Hb_027522_020 Hb_027522_020 Hb_022599_010--Hb_027522_020 Hb_005352_010 Hb_005352_010 Hb_022599_010--Hb_005352_010 Hb_004762_020 Hb_004762_020 Hb_022599_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_022599_010--Hb_005405_010 Hb_002396_010 Hb_002396_010 Hb_022599_010--Hb_002396_010 Hb_062317_010--Hb_027522_020 Hb_110426_010 Hb_110426_010 Hb_062317_010--Hb_110426_010 Hb_000723_150 Hb_000723_150 Hb_062317_010--Hb_000723_150 Hb_002375_100 Hb_002375_100 Hb_062317_010--Hb_002375_100 Hb_001172_110 Hb_001172_110 Hb_062317_010--Hb_001172_110 Hb_027522_020--Hb_005352_010 Hb_003915_030 Hb_003915_030 Hb_027522_020--Hb_003915_030 Hb_006778_010 Hb_006778_010 Hb_027522_020--Hb_006778_010 Hb_001255_070 Hb_001255_070 Hb_027522_020--Hb_001255_070 Hb_005352_010--Hb_062317_010 Hb_123951_010 Hb_123951_010 Hb_005352_010--Hb_123951_010 Hb_005352_010--Hb_003915_030 Hb_005352_010--Hb_004762_020 Hb_004762_020--Hb_005405_010 Hb_188450_010 Hb_188450_010 Hb_004762_020--Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_004762_020--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_004762_020--Hb_000599_070 Hb_030370_010 Hb_030370_010 Hb_004762_020--Hb_030370_010 Hb_005405_010--Hb_188450_010 Hb_005405_010--Hb_009042_010 Hb_005405_010--Hb_000599_070 Hb_005405_010--Hb_030370_010 Hb_001348_240 Hb_001348_240 Hb_002396_010--Hb_001348_240 Hb_174010_030 Hb_174010_030 Hb_002396_010--Hb_174010_030 Hb_004145_030 Hb_004145_030 Hb_002396_010--Hb_004145_030 Hb_006599_040 Hb_006599_040 Hb_002396_010--Hb_006599_040 Hb_000777_010 Hb_000777_010 Hb_002396_010--Hb_000777_010 Hb_000905_010 Hb_000905_010 Hb_002396_010--Hb_000905_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00462627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00714695 0.0772604

CAGE analysis