Hb_001255_070

Information

Type -
Description -
Location Contig1255: 80849-84682
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001255_070 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000917_020 0.00066404 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_003908_010 0.0007758629 - - polyprotein [Oryza australiensis]
4 Hb_007524_040 0.0008404512 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
5 Hb_005300_050 0.0010688614 - - hypothetical protein VITISV_001308 [Vitis vinifera]
6 Hb_005352_020 0.0059801105 - - -
7 Hb_049490_010 0.0130744555 - - hypothetical protein VITISV_013805 [Vitis vinifera]
8 Hb_055002_010 0.0166248846 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
9 Hb_127361_010 0.0219941688 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_080126_010 0.0223335622 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
11 Hb_003898_010 0.0265142792 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_010523_020 0.0271170605 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002281_060 0.0293695572 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
14 Hb_001115_060 0.0302791968 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
15 Hb_000668_030 0.0307594107 - - -
16 Hb_018283_010 0.0312407679 - - hypothetical protein VITISV_023498 [Vitis vinifera]
17 Hb_000789_210 0.0325060899 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_004984_090 0.0373729821 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
19 Hb_000051_100 0.0398532039 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
20 Hb_001623_450 0.0400994374 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]

Gene co-expression network

sample Hb_001255_070 Hb_001255_070 Hb_000917_020 Hb_000917_020 Hb_001255_070--Hb_000917_020 Hb_003908_010 Hb_003908_010 Hb_001255_070--Hb_003908_010 Hb_007524_040 Hb_007524_040 Hb_001255_070--Hb_007524_040 Hb_005300_050 Hb_005300_050 Hb_001255_070--Hb_005300_050 Hb_005352_020 Hb_005352_020 Hb_001255_070--Hb_005352_020 Hb_049490_010 Hb_049490_010 Hb_001255_070--Hb_049490_010 Hb_000917_020--Hb_007524_040 Hb_000917_020--Hb_003908_010 Hb_000917_020--Hb_005300_050 Hb_000917_020--Hb_005352_020 Hb_000917_020--Hb_049490_010 Hb_003908_010--Hb_005300_050 Hb_003908_010--Hb_007524_040 Hb_003908_010--Hb_005352_020 Hb_003908_010--Hb_049490_010 Hb_007524_040--Hb_005300_050 Hb_007524_040--Hb_005352_020 Hb_007524_040--Hb_049490_010 Hb_005300_050--Hb_005352_020 Hb_005300_050--Hb_049490_010 Hb_005352_020--Hb_049490_010 Hb_055002_010 Hb_055002_010 Hb_049490_010--Hb_055002_010 Hb_127361_010 Hb_127361_010 Hb_049490_010--Hb_127361_010 Hb_080126_010 Hb_080126_010 Hb_049490_010--Hb_080126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00404359 0.0872186

CAGE analysis