Hb_005300_050

Information

Type -
Description -
Location Contig5300: 165763-168374
Sequence    

Annotation

kegg
ID vvi:100852852
description uncharacterized LOC100852852
nr
ID CAN78055.1
description hypothetical protein VITISV_001308 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5ALU1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001308 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005300_050 0.0 - - hypothetical protein VITISV_001308 [Vitis vinifera]
2 Hb_003908_010 0.0002929994 - - polyprotein [Oryza australiensis]
3 Hb_001255_070 0.0010688614 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000917_020 0.0017328968 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_007524_040 0.0019093062 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
6 Hb_005352_020 0.0070488 - - -
7 Hb_049490_010 0.0141425419 - - hypothetical protein VITISV_013805 [Vitis vinifera]
8 Hb_055002_010 0.0176924961 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
9 Hb_127361_010 0.0230608298 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_080126_010 0.0234001534 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
11 Hb_003898_010 0.0254478546 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_010523_020 0.0260507446 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002281_060 0.0283036666 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
14 Hb_001115_060 0.0292134861 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
15 Hb_000668_030 0.0296937969 - - -
16 Hb_000789_210 0.0314408393 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
17 Hb_018283_010 0.0323050902 - - hypothetical protein VITISV_023498 [Vitis vinifera]
18 Hb_004984_090 0.0363088306 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
19 Hb_001623_450 0.0390359555 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
20 Hb_000051_100 0.0391526001 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]

Gene co-expression network

sample Hb_005300_050 Hb_005300_050 Hb_003908_010 Hb_003908_010 Hb_005300_050--Hb_003908_010 Hb_001255_070 Hb_001255_070 Hb_005300_050--Hb_001255_070 Hb_000917_020 Hb_000917_020 Hb_005300_050--Hb_000917_020 Hb_007524_040 Hb_007524_040 Hb_005300_050--Hb_007524_040 Hb_005352_020 Hb_005352_020 Hb_005300_050--Hb_005352_020 Hb_049490_010 Hb_049490_010 Hb_005300_050--Hb_049490_010 Hb_003908_010--Hb_001255_070 Hb_003908_010--Hb_000917_020 Hb_003908_010--Hb_007524_040 Hb_003908_010--Hb_005352_020 Hb_003908_010--Hb_049490_010 Hb_001255_070--Hb_000917_020 Hb_001255_070--Hb_007524_040 Hb_001255_070--Hb_005352_020 Hb_001255_070--Hb_049490_010 Hb_000917_020--Hb_007524_040 Hb_000917_020--Hb_005352_020 Hb_000917_020--Hb_049490_010 Hb_007524_040--Hb_005352_020 Hb_007524_040--Hb_049490_010 Hb_005352_020--Hb_049490_010 Hb_055002_010 Hb_055002_010 Hb_049490_010--Hb_055002_010 Hb_127361_010 Hb_127361_010 Hb_049490_010--Hb_127361_010 Hb_080126_010 Hb_080126_010 Hb_049490_010--Hb_080126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00649448 0.138385

CAGE analysis