Hb_003908_010

Information

Type -
Description -
Location Contig3908: 7160-10149
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003908_010 0.0 - - polyprotein [Oryza australiensis]
2 Hb_005300_050 0.0002929994 - - hypothetical protein VITISV_001308 [Vitis vinifera]
3 Hb_001255_070 0.0007758629 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000917_020 0.0014399001 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_007524_040 0.0016163102 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
6 Hb_005352_020 0.0067558537 - - -
7 Hb_049490_010 0.0138497669 - - hypothetical protein VITISV_013805 [Vitis vinifera]
8 Hb_055002_010 0.0173998542 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
9 Hb_127361_010 0.0227684529 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_080126_010 0.0231077959 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
11 Hb_003898_010 0.0257402073 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_010523_020 0.0263430681 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002281_060 0.0285958753 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
14 Hb_001115_060 0.0295056462 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
15 Hb_000668_030 0.0299859308 - - -
16 Hb_000789_210 0.0317328751 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
17 Hb_018283_010 0.0320133618 - - hypothetical protein VITISV_023498 [Vitis vinifera]
18 Hb_004984_090 0.036600569 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
19 Hb_001623_450 0.0393275126 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
20 Hb_000051_100 0.0393430332 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]

Gene co-expression network

sample Hb_003908_010 Hb_003908_010 Hb_005300_050 Hb_005300_050 Hb_003908_010--Hb_005300_050 Hb_001255_070 Hb_001255_070 Hb_003908_010--Hb_001255_070 Hb_000917_020 Hb_000917_020 Hb_003908_010--Hb_000917_020 Hb_007524_040 Hb_007524_040 Hb_003908_010--Hb_007524_040 Hb_005352_020 Hb_005352_020 Hb_003908_010--Hb_005352_020 Hb_049490_010 Hb_049490_010 Hb_003908_010--Hb_049490_010 Hb_005300_050--Hb_001255_070 Hb_005300_050--Hb_000917_020 Hb_005300_050--Hb_007524_040 Hb_005300_050--Hb_005352_020 Hb_005300_050--Hb_049490_010 Hb_001255_070--Hb_000917_020 Hb_001255_070--Hb_007524_040 Hb_001255_070--Hb_005352_020 Hb_001255_070--Hb_049490_010 Hb_000917_020--Hb_007524_040 Hb_000917_020--Hb_005352_020 Hb_000917_020--Hb_049490_010 Hb_007524_040--Hb_005352_020 Hb_007524_040--Hb_049490_010 Hb_005352_020--Hb_049490_010 Hb_055002_010 Hb_055002_010 Hb_049490_010--Hb_055002_010 Hb_127361_010 Hb_127361_010 Hb_049490_010--Hb_127361_010 Hb_080126_010 Hb_080126_010 Hb_049490_010--Hb_080126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00582114 0.124452

CAGE analysis