Hb_055002_010

Information

Type -
Description -
Location Contig55002: 622-3178
Sequence    

Annotation

kegg
ID bvg:104907627
description uncharacterized LOC104907627
nr
ID XP_010694888.1
description PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID I1IWC2
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI5G03654 PE=4 SV=1
Gene Ontology
ID GO:0016740
description solanesyl diphosphate synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055002_010 0.0 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
2 Hb_049490_010 0.0035536769 - - hypothetical protein VITISV_013805 [Vitis vinifera]
3 Hb_127361_010 0.0053778545 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_080126_010 0.0057179432 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
5 Hb_005352_020 0.0106491017 - - -
6 Hb_018283_010 0.0146503159 - - hypothetical protein VITISV_023498 [Vitis vinifera]
7 Hb_007524_040 0.0157853168 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
8 Hb_000917_020 0.0159615499 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_001255_070 0.0166248846 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_003908_010 0.0173998542 - - polyprotein [Oryza australiensis]
11 Hb_005300_050 0.0176924961 - - hypothetical protein VITISV_001308 [Vitis vinifera]
12 Hb_003898_010 0.0430707677 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_010523_020 0.0436711815 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_002281_060 0.0459145502 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
15 Hb_001115_060 0.0468203798 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
16 Hb_000668_030 0.047298554 - - -
17 Hb_000789_210 0.0490376518 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_000051_100 0.0523372421 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
19 Hb_004984_090 0.0538821147 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
20 Hb_001623_450 0.0565951993 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]

Gene co-expression network

sample Hb_055002_010 Hb_055002_010 Hb_049490_010 Hb_049490_010 Hb_055002_010--Hb_049490_010 Hb_127361_010 Hb_127361_010 Hb_055002_010--Hb_127361_010 Hb_080126_010 Hb_080126_010 Hb_055002_010--Hb_080126_010 Hb_005352_020 Hb_005352_020 Hb_055002_010--Hb_005352_020 Hb_018283_010 Hb_018283_010 Hb_055002_010--Hb_018283_010 Hb_007524_040 Hb_007524_040 Hb_055002_010--Hb_007524_040 Hb_049490_010--Hb_005352_020 Hb_049490_010--Hb_127361_010 Hb_049490_010--Hb_080126_010 Hb_049490_010--Hb_007524_040 Hb_000917_020 Hb_000917_020 Hb_049490_010--Hb_000917_020 Hb_127361_010--Hb_080126_010 Hb_127361_010--Hb_018283_010 Hb_127361_010--Hb_005352_020 Hb_127361_010--Hb_007524_040 Hb_080126_010--Hb_018283_010 Hb_080126_010--Hb_005352_020 Hb_080126_010--Hb_007524_040 Hb_005352_020--Hb_007524_040 Hb_005352_020--Hb_000917_020 Hb_001255_070 Hb_001255_070 Hb_005352_020--Hb_001255_070 Hb_003908_010 Hb_003908_010 Hb_005352_020--Hb_003908_010 Hb_005300_050 Hb_005300_050 Hb_005352_020--Hb_005300_050 Hb_018283_010--Hb_049490_010 Hb_018283_010--Hb_005352_020 Hb_018283_010--Hb_007524_040 Hb_007524_040--Hb_000917_020 Hb_007524_040--Hb_001255_070 Hb_007524_040--Hb_003908_010 Hb_007524_040--Hb_005300_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00889533 0.234147

CAGE analysis