Hb_080126_010

Information

Type transcription factor
Description TF Family: FAR1
Location Contig80126: 23-622
Sequence    

Annotation

kegg
ID rcu:RCOM_0252920
description hypothetical protein
nr
ID EYU37352.1
description hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
swissprot
ID Q9SY66
description Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1
trembl
ID A0A022RAH9
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025104mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080126_010 0.0 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
2 Hb_127361_010 0.0003401388 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
3 Hb_055002_010 0.0057179432 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
4 Hb_018283_010 0.0089361006 - - hypothetical protein VITISV_023498 [Vitis vinifera]
5 Hb_049490_010 0.0092707519 - - hypothetical protein VITISV_013805 [Vitis vinifera]
6 Hb_005352_020 0.0163625873 - - -
7 Hb_007524_040 0.0214947633 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
8 Hb_000917_020 0.0216708374 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_001255_070 0.0223335622 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_003908_010 0.0231077959 - - polyprotein [Oryza australiensis]
11 Hb_005300_050 0.0234001534 - - hypothetical protein VITISV_001308 [Vitis vinifera]
12 Hb_003898_010 0.0487416655 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_010523_020 0.0493409527 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_002281_060 0.0515800201 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
15 Hb_001115_060 0.0524840724 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
16 Hb_000668_030 0.0529612993 - - -
17 Hb_000789_210 0.0546968988 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_004987_050 0.0547341009 - - -
19 Hb_000051_100 0.0570907791 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
20 Hb_004984_090 0.0595311941 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_080126_010 Hb_080126_010 Hb_127361_010 Hb_127361_010 Hb_080126_010--Hb_127361_010 Hb_055002_010 Hb_055002_010 Hb_080126_010--Hb_055002_010 Hb_018283_010 Hb_018283_010 Hb_080126_010--Hb_018283_010 Hb_049490_010 Hb_049490_010 Hb_080126_010--Hb_049490_010 Hb_005352_020 Hb_005352_020 Hb_080126_010--Hb_005352_020 Hb_007524_040 Hb_007524_040 Hb_080126_010--Hb_007524_040 Hb_127361_010--Hb_055002_010 Hb_127361_010--Hb_049490_010 Hb_127361_010--Hb_018283_010 Hb_127361_010--Hb_005352_020 Hb_127361_010--Hb_007524_040 Hb_055002_010--Hb_049490_010 Hb_055002_010--Hb_005352_020 Hb_055002_010--Hb_018283_010 Hb_055002_010--Hb_007524_040 Hb_018283_010--Hb_049490_010 Hb_018283_010--Hb_005352_020 Hb_018283_010--Hb_007524_040 Hb_049490_010--Hb_005352_020 Hb_049490_010--Hb_007524_040 Hb_000917_020 Hb_000917_020 Hb_049490_010--Hb_000917_020 Hb_005352_020--Hb_007524_040 Hb_005352_020--Hb_000917_020 Hb_001255_070 Hb_001255_070 Hb_005352_020--Hb_001255_070 Hb_003908_010 Hb_003908_010 Hb_005352_020--Hb_003908_010 Hb_005300_050 Hb_005300_050 Hb_005352_020--Hb_005300_050 Hb_007524_040--Hb_000917_020 Hb_007524_040--Hb_001255_070 Hb_007524_040--Hb_003908_010 Hb_007524_040--Hb_005300_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0325444 0.921459

CAGE analysis